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SCNpilot_cont_300_bf_scaffold_2085_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2085_curated_1
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..274)
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003618816
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2085_curated_2
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(289..708)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D365_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGT81027.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCNpilot_cont_300_bf_scaffold_2085_curated_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(844..2040)
DNA (1197bp) protein (399aa)
Putative transport protein id=2763131 bin=GWC2_Syntrophus__56_31 species=unknown genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
transport protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2085_curated_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2112..2918
DNA (807bp) protein (269aa)
AraC family transcriptional regulator n=1 Tax=Oceanibaculum indicum P24 RepID=K2KMW5_9PROT
transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2085_curated_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3455..5293
DNA (1839bp) protein (613aa)
Putative glutamate synthase small subunit n=1 Tax=alpha proteobacterium BAL199 RepID=A8TW52_9PROT
putative glutamate synthase small subunit
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2085_curated_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5278..7119
DNA (1842bp) protein (614aa)
ferredoxin oxidoreductase subunit alpha; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] rbh
Putative ferredoxin oxidoreductase alpha subunit n=1 Tax=alpha proteobacterium BAL199 RepID=A8TW53_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2085_curated_7
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7116..8171
DNA (1056bp) protein (352aa)
2-oxoglutarate ferredoxin oxidoreductase subunit beta; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3]
Thiamine pyrophosphate enzyme domain protein TPP-binding n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VBB7_SPHWW
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2085_curated_8
unknown

Not on your lists

comp(8181..8672)
DNA (492bp) protein (164aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2085_curated_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8742..10859)
DNA (2118bp) protein (706aa)
adenylate cyclase 1; K01768 adenylate cyclase [EC:4.6.1.1]
Adenylate cyclase 1 n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W7Z5_MAGSA
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2085_curated_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11022..11519)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2KE33_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2085_curated_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11522..12163)
DNA (642bp) protein (214aa)
Putative transcriptional regulatory protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TMW2_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2085_curated_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12259..13185
DNA (927bp) protein (309aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2085_curated_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13168..14883)
DNA (1716bp) protein (572aa)
ABC transporter domain protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A4R4_STAND
ABC transporter; K02471 putative ATP-binding cassette transporter
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2085_curated_14
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14914..16212)
DNA (1299bp) protein (433aa)
TrapT family, dctM subunit, C4-dicarboxylate transport n=2 Tax=Bradyrhizobium RepID=H0RVM7_9BRAD
TRAP dicarboxylate transporter subunit DctM
TrapT family, dctM subunit, C4-dicarboxylate transport {ECO:0000313|EMBL:CCD86004.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
SCNpilot_cont_300_bf_scaffold_2085_curated_15
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16209..16730)
DNA (522bp) protein (174aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Bradyrhizobium japonicum RepID=UPI00035F2D03
Putative TrapT family, dctQ subunit, C4-dicarboxylate transport {ECO:0000313|EMBL:CCE02315.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
TRAP C4-dicarboxylate transport system subunit DctQ
SCNpilot_cont_300_bf_scaffold_2085_curated_16
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16880..17911)
DNA (1032bp) protein (344aa)
TRAP dicarboxylate transporter-DctP subunit n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07JZ8_RHOP5
Bradyrhizobium elkanii strain UASWS1015 Contig181, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46800.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
TRAP dicarboxylate transporter subunit DctP
SCNpilot_cont_300_bf_scaffold_2085_curated_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17993..19285
DNA (1293bp) protein (431aa)
rsmB; ribosomal RNA small subunit methyltransferase B (EC:2.1.1.-); K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IPN2_RHOCS
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2085_curated_18
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19357..20382
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034B5D8D
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:AJC21464.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
dctP; C4-dicarboxylate-binding periplasmic protein
SCNpilot_cont_300_bf_scaffold_2085_curated_19
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20379..20876
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI000382AABC
TRAP-type C4-dicarboxylate transport system small permease {ECO:0000313|EMBL:EIJ47907.1}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. GW103.;"
dctQ; TRAP-type C4-dicarboxylate transport system small permease
SCNpilot_cont_300_bf_scaffold_2085_curated_20
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20879..22129
DNA (1251bp) protein (417aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UKH6_METS4
TRAP dicarboxylate transporter subunit DctM
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:ACA20309.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
Displaying 20 items

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