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SCNpilot_cont_300_bf_scaffold_1547_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1547_curated_1
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..490)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000370DF49
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGT74375.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCNpilot_cont_300_bf_scaffold_1547_curated_2
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(501..2255)
DNA (1755bp) protein (585aa)
ilvD; dihydroxy-acid dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0FYU2_9BRAD
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:BAL73679.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_300_bf_scaffold_1547_curated_3
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2316..2999
DNA (684bp) protein (228aa)
Transcriptional regulator n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I1T2_9BRAD
Transcriptional regulator {ECO:0000313|EMBL:EJN12363.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1547_curated_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2996..3487)
DNA (492bp) protein (164aa)
Glutathione-dependent formaldehyde-activating, GFA n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12H38_POLSJ
glutathione-dependent formaldehyde-activating protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1547_curated_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3500..3868)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000377360F
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1547_curated_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3916..4704
DNA (789bp) protein (263aa)
3-oxoacyl-(Acyl-carrier-protein) reductase id=2521453 bin=GWC2_Methylomirabilis_70_16 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
3-oxoacyl-ACP reductase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1547_curated_7
unknown

Not on your lists

4736..5236
DNA (501bp) protein (167aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1547_curated_8
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5250..5642
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZ65_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGM33283.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_cont_300_bf_scaffold_1547_curated_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5632..6537)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TMM6_9PROT
hypothetical protein; K15270 S-adenosylmethionine uptake transporter
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1547_curated_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6534..7607)
DNA (1074bp) protein (358aa)
Luciferase family protein n=3 Tax=Amycolatopsis mediterranei RepID=D8HZA9_AMYMU
luciferase family protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1547_curated_11
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7626..8600)
DNA (975bp) protein (325aa)
Putative uncharacterized protein id=1274785 bin=GWE1_Burkholderiales_65_30 species=Hylemonella gracilis genus=Hylemonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
extracytoplasmic binding receptor
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
SCNpilot_cont_300_bf_scaffold_1547_curated_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8725..10413
DNA (1689bp) protein (563aa)
Amidohydrolase 3 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWK5_PARL1
amidohydrolase 3
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1547_curated_13
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10688..12517
DNA (1830bp) protein (610aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00037052D6
rhlE; ATP-dependent RNA helicase
Putative ATP-dependent RNA helicase {ECO:0000313|EMBL:CAJ47777.1}; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella avium (strain 197N).;"
SCNpilot_cont_300_bf_scaffold_1547_curated_14
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12556..13485)
DNA (930bp) protein (310aa)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T1I9_ALCXX
3-hydroxyacyl-CoA dehydrogenase, C-terminal domain-containing protein 1
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_cont_300_bf_scaffold_1547_curated_15
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13565..14341
DNA (777bp) protein (259aa)
Putative enoyl-CoA hydratase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0FZE5_9BRAD
enoyl-CoA hydratase
Putative enoyl-CoA hydratase {ECO:0000313|EMBL:BAL73882.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_300_bf_scaffold_1547_curated_16
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14349..15155
DNA (807bp) protein (269aa)
Dehydrogenase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89M15_BRADU
dehydrogenase rbh
Dehydrogenase {ECO:0000313|EMBL:KJC50199.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
SCNpilot_cont_300_bf_scaffold_1547_curated_17
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15193..15564
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V261_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ66377.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_1547_curated_18
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15648..16937
DNA (1290bp) protein (430aa)
membrane protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI0003061D45
putative citrate-proton symporter
Citrate-proton symporter {ECO:0000313|EMBL:EOA04235.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
SCNpilot_cont_300_bf_scaffold_1547_curated_19
Hyphomonas johnsonii, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16963..17445)
DNA (483bp) protein (161aa)
Putative Competence-damaged protein (CinA_like) n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RVI5_9BRAD
CinA domain-containing protein {ECO:0000313|EMBL:KCZ89974.1}; TaxID=1280950 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas johnsonii MHS-2.;"
CinA domain-containing protein
SCNpilot_cont_300_bf_scaffold_1547_curated_20
Burkholderia sp. CCGE1003, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17451..17795)
DNA (345bp) protein (115aa)
Dopa 45-dioxygenase; K10253 DOPA 4,5-dioxygenase [EC:1.14.99.-]
Dopa 45-dioxygenase n=1 Tax=Burkholderia sp. (strain CCGE1003) RepID=E1THW5_BURSG
Dopa 45-dioxygenase {ECO:0000313|EMBL:ADN60724.1}; TaxID=640512 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1003).;"
SCNpilot_cont_300_bf_scaffold_1547_curated_21
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17882..19006
DNA (1125bp) protein (375aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRQ4_PARL1
acyl-CoA dehydrogenase domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1547_curated_22
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19136..20359
DNA (1224bp) protein (408aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRQ5_PARL1
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:GAK45194.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
acyl-CoA dehydrogenase domain-containing protein
SCNpilot_cont_300_bf_scaffold_1547_curated_23
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20528..21496)
DNA (969bp) protein (323aa)
Putative Bug family protein, id=4063408 bin=GWC2_Syntrophus__56_31 species=Deinococcus deserti genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
Bug family protein
Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
SCNpilot_cont_300_bf_scaffold_1547_curated_24
CG_Syntroph_01, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21541..23040)
DNA (1500bp) protein (500aa)
Putative uncharacterized protein id=4063407 bin=GWC2_Syntrophus__56_31 species=Deinococcus deserti genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein; K07793 putative tricarboxylic transport membrane protein
Tax=CG_Syntroph_01
SCNpilot_cont_300_bf_scaffold_1547_curated_25
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23044..23526)
DNA (483bp) protein (161aa)
Putative uncharacterized protein id=4063312 bin=GWC2_Syntrophus__56_31 species=Deinococcus deserti genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
Tripartite tricarboxylate transporter TctB family
Tax=GWC2_Syntrophus_56_31_curated
SCNpilot_cont_300_bf_scaffold_1547_curated_26
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23655..24458
DNA (804bp) protein (268aa)
8 dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) n=1 Tax=uncultured alpha proteobacterium HF0070_14E07 RepID=E0XS65_9PROT
oxidoreductase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1547_curated_27
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24465..24902)
DNA (438bp) protein (146aa)
Multimeric flavodoxin WrbA n=1 Tax=alpha proteobacterium BAL199 RepID=A8TT88_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1547_curated_28
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24922..28257
DNA (3336bp) protein (1112aa)
Pyruvate carboxylase n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YAM0_9GAMM
carbamoyl-phosphate synthase L chain, ATP-binding
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying 28 items

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