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SCNpilot_cont_300_bf_scaffold_1130_curated

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1130_curated_1
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..303)
DNA (303bp) protein (101aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1130_curated_2
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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804..1277
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI0003797084
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAX26086.1}; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
SCNpilot_cont_300_bf_scaffold_1130_curated_3
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1369..1827)
DNA (459bp) protein (153aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00035F22CB
AhpD family alkylhydroperoxidase-like protein
SCNpilot_cont_300_bf_scaffold_1130_curated_4
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1875..2294)
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI000377C7E0
Uncharacterized protein {ECO:0000313|EMBL:AJA08179.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1130_curated_5
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2400..3161)
DNA (762bp) protein (254aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YAZ9_MESOW
Uncharacterized protein {ECO:0000313|EMBL:AHE54208.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
NAD-dependent epimerase/dehydratase
SCNpilot_cont_300_bf_scaffold_1130_curated_6
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3201..3785)
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003614A2D
Ketoreductase {ECO:0000313|EMBL:KJB93526.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
3-oxoacyl-(acyl-carrier-protein) reductase
SCNpilot_cont_300_bf_scaffold_1130_curated_7
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3965..4750)
DNA (786bp) protein (262aa)
UPI0003CF981F related cluster n=1 Tax=unknown RepID=UPI0003CF981F
Alpha/beta hydrolase {ECO:0000313|EMBL:ESW94118.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
alpha/beta hydrolase fold protein
SCNpilot_cont_300_bf_scaffold_1130_curated_8
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4963..5961
DNA (999bp) protein (333aa)
lipase/esterase; K01066 esterase / lipase [EC:3.1.1.-]
esterase n=1 Tax=Burkholderia kururiensis RepID=UPI0003496CC4
Esterase/lipase {ECO:0000313|EMBL:EJJ26015.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_cont_300_bf_scaffold_1130_curated_9
Hyphomonas johnsonii, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6028..8154)
DNA (2127bp) protein (709aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1280950 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas johnsonii MHS-2.;"
Two-component system sensor histidine kinase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S3U8_9SPHN
two-component system sensor histidine kinase
SCNpilot_cont_300_bf_scaffold_1130_curated_10
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8252..8620)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI0003649212
Uncharacterized protein {ECO:0000313|EMBL:KGM33725.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
Putative two-component response regulator, CheY-like protein
SCNpilot_cont_300_bf_scaffold_1130_curated_11
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8687..9463)
DNA (777bp) protein (259aa)
Two component response regulator n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JII2_9RHIZ
LuxR family transcriptional regulator {ECO:0000313|EMBL:KGM33726.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
nwsB; two component response regulator
SCNpilot_cont_300_bf_scaffold_1130_curated_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9609..11225)
DNA (1617bp) protein (539aa)
Transcriptional regulator domain protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZPU5_RHILW
transcriptional regulator
Transcriptional regulator domain protein {ECO:0000313|EMBL:ACI55065.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_cont_300_bf_scaffold_1130_curated_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11328..11843
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MI68_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KDP75180.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
N-acetyltransferase GCN5
SCNpilot_cont_300_bf_scaffold_1130_curated_14
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11903..12820)
DNA (918bp) protein (306aa)
Zn-dependent hydrolase, glyoxylase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YRB9_9RHIZ
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:EIM26511.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
beta-lactamase
SCNpilot_cont_300_bf_scaffold_1130_curated_15
unknown

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13093..13197
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1130_curated_16
unknown

Not on your lists

comp(13504..13617)
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1130_curated_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13672..14565)
DNA (894bp) protein (298aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium radiobacter RepID=UPI00036A5B67
LysR family transcriptional regulator {ECO:0000313|EMBL:EPR22669.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
transcriptional regulator, LysR family
SCNpilot_cont_300_bf_scaffold_1130_curated_18
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14707..15654
DNA (948bp) protein (316aa)
Putative S15 family serine protease n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPC4_RHITR
putative S15 family serine protease
Putative S15 family serine protease {ECO:0000313|EMBL:AGB73213.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_1130_curated_19
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15708..16664
DNA (957bp) protein (319aa)
Alpha/beta hydrolase fold-1 catalytic domain-containing protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPN7_RHITR
alpha/beta hydrolase fold-1 catalytic domain-containing protein
Alpha/beta hydrolase fold-1 catalytic domain-containing protein {ECO:0000313|EMBL:AGB73212.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying 19 items

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