ggKbase home page

SCNpilot_cont_300_bf_scaffold_477_curated

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_477_curated_1
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

278..2032
DNA (1755bp) protein (585aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B4M9_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK57182.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_300_bf_scaffold_477_curated_2
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2507..3217)
DNA (711bp) protein (237aa)
Sulfurtransferase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KNV4_RHISN
ArsR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_477_curated_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3285..4496
DNA (1212bp) protein (404aa)
Putative tetracycline resistance protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UW48_9RHIZ
MFS permease
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_477_curated_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4505..5059
DNA (555bp) protein (185aa)
Putative Sterol desaturase n=1 Tax=uncultured organism RepID=Q1EI10_9ZZZZ
sterol desaturase-like protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_477_curated_5
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5076..5987
DNA (912bp) protein (304aa)
integrase n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI000367892F
Integrase {ECO:0000313|EMBL:AJD52996.1}; TaxID=1123366 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira xiamenensis M-5 = DSM 17429.;"
integrase catalytic subunit
SCNpilot_cont_300_bf_scaffold_477_curated_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6005..6328
DNA (324bp) protein (108aa)
Fatty acid hydroxylase n=1 Tax=Oceanibaculum indicum P24 RepID=K2IYG8_9PROT
sterol desaturase-like protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_477_curated_7
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6792..7157)
DNA (366bp) protein (122aa)
Isrso18-transposase protein n=1 Tax=Ralstonia solanacearum (strain GMI1000) RepID=Q8XYQ4_RALSO
tISRso18; ISRSO18-transposase; K07481 transposase, IS5 family
Isrso18-transposase protein {ECO:0000313|EMBL:CAD15406.1}; TaxID=267608 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (strain GMI1000) (Pseudomonas solanacearum).;"
SCNpilot_cont_300_bf_scaffold_477_curated_8
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7383..7631
DNA (249bp) protein (83aa)
camphor resistance protein CrcB n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI000369B3AF
CrcB protein; K06199 CrcB protein
Putative fluoride ion transporter CrcB {ECO:0000255|HAMAP-Rule:MF_00454}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCNpilot_cont_300_bf_scaffold_477_curated_9
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7850..8578
DNA (729bp) protein (243aa)
Acid phosphatase {ECO:0000256|PIRNR:PIRNR000897}; EC=3.1.3.2 {ECO:0000256|PIRNR:PIRNR000897};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00036B19D9
acid phosphatase/vanadium-dependent haloperoxidase
SCNpilot_cont_300_bf_scaffold_477_curated_10
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8651..10666)
DNA (2016bp) protein (672aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003751D09
PA-phosphatase {ECO:0000313|EMBL:GAO35504.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
phosphoesterase, PA-phosphatase-like protein
SCNpilot_cont_300_bf_scaffold_477_curated_11
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10774..11181
DNA (408bp) protein (136aa)
Cupin 2 protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21XR8_RHOFD
cupin 2 protein
Cupin 2 protein {ECO:0000313|EMBL:ABD69435.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCNpilot_cont_300_bf_scaffold_477_curated_12
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11458..12057
DNA (600bp) protein (200aa)
Integrase, catalytic domain protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ETP0_BRASB
integrase catalytic subunit
Integrase, catalytic domain protein {ECO:0000313|EMBL:ABQ39534.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_300_bf_scaffold_477_curated_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12351..15545)
DNA (3195bp) protein (1065aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036C79A1
Cation efflux system protein CzcA {ECO:0000313|EMBL:CEG10553.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
multidrug ABC transporter
SCNpilot_cont_300_bf_scaffold_477_curated_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15542..16645)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4P5_9BRAD
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:CEG10552.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_477_curated_15
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16632..17846)
DNA (1215bp) protein (405aa)
Major facilitator superfamily MFS_1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4P6_9BRAD
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EFI52926.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
major facilitator superfamily transporter
SCNpilot_cont_300_bf_scaffold_477_curated_16
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17916..18548)
DNA (633bp) protein (211aa)
ChrB domain-containing protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4P7_9BRAD
ChrB domain-containing protein {ECO:0000313|EMBL:EFI52927.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
ChrB domain-containing protein
SCNpilot_cont_300_bf_scaffold_477_curated_17
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18954..19187
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00037B9D67
Putative uncharacterized protein {ECO:0000313|EMBL:EHR00897.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_477_curated_18
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19335..19709)
DNA (375bp) protein (125aa)
ISSpo2, transposase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TY37_9PROT
ISSpo2, transposase {ECO:0000313|EMBL:EDP62667.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
transposase IS4 family protein
SCNpilot_cont_300_bf_scaffold_477_curated_19
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20385..21347)
DNA (963bp) protein (321aa)
copper resistance protein CopB n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B57DD0
Copper resistance protein CopB {ECO:0000313|EMBL:KFL46262.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
copper resistance protein CopB; K07233 copper resistance protein B
SCNpilot_cont_300_bf_scaffold_477_curated_20
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21344..23059)
DNA (1716bp) protein (572aa)
Copper-resistance protein CopA n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GV18_SPHAL
copper-resistance protein CopA
Copper-resistance protein CopA {ECO:0000313|EMBL:ABF52504.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_cont_300_bf_scaffold_477_curated_21
unknown

Not on your lists

23096..23329
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_477_curated_22
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23733..24002)
DNA (270bp) protein (90aa)
UPI0003D608F7 related cluster n=1 Tax=unknown RepID=UPI0003D608F7
Heavy metal resistance protein {ECO:0000313|EMBL:ETI65492.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_477_curated_23
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24650..24901
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GXW8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AID31579.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_477_curated_24
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25171..26448)
DNA (1278bp) protein (426aa)
Putative nodulin-related protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EHU3_BRASB
nodulin-like protein
Putative nodulin-related protein {ECO:0000313|EMBL:ABQ35737.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_300_bf_scaffold_477_curated_25
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26656..28542)
DNA (1887bp) protein (629aa)
Putative adenylate cyclase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A565_RHIFH
putative adenylate cyclase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_477_curated_26
unknown

Not on your lists

comp(28558..28680)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_477_curated_27
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28947..29597)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. M47T1 RepID=I4N3F5_9PSED
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_477_curated_28

Not on your lists

29819..30232
DNA (414bp) protein (138aa)
Integrase, catalytic region n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q028E4_SOLUE
Marine sediment metagenome DNA, contig: S01H1_S18741 {ECO:0000313|EMBL:GAG26536.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
integrase catalytic subunit
SCNpilot_cont_300_bf_scaffold_477_curated_29
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30316..31341
DNA (1026bp) protein (342aa)
UPI0003CF5E94 related cluster n=1 Tax=unknown RepID=UPI0003CF5E94
Transposase IS110 {ECO:0000313|EMBL:ESY77188.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
transposase IS116/IS110/IS902 family protein
SCNpilot_cont_300_bf_scaffold_477_curated_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33035..33751)
DNA (717bp) protein (239aa)
UPI0003CFE27A related cluster n=1 Tax=unknown RepID=UPI0003CFE27A
Uncharacterized protein {ECO:0000313|EMBL:KFC64624.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
Displaying items 1-30 of 74 in total

View Taxonomy