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SCNpilot_cont_300_bf_scaffold_1220_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1220_curated_1
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..210
DNA (210bp) protein (70aa)
ABC transporter permease n=1 Tax=Xanthobacteraceae RepID=UPI000361D663
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ADH89048.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_300_bf_scaffold_1220_curated_2
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

207..854
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036B6A8A
Amino acid ABC transporter permease {ECO:0000313|EMBL:EOA05959.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
hisM; amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_cont_300_bf_scaffold_1220_curated_3
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

841..1584
DNA (744bp) protein (248aa)
amino acid ABC transporter ATPase; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000375CCFB
ABC-type polar amino acid transport system, ATPase component {ECO:0000313|EMBL:EJN02987.1}; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
SCNpilot_cont_300_bf_scaffold_1220_curated_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1560..2282)
DNA (723bp) protein (241aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1220_curated_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2308..3033)
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036371C7
putative extracellular solute-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1220_curated_6
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3080..3442
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TWM3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP63124.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1220_curated_7
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3728..5266
DNA (1539bp) protein (513aa)
carboxylesterase type B; K03929 para-nitrobenzyl esterase [EC:3.1.1.-]
Carboxylesterase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TTG9_9CHLR
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1220_curated_8
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5263..6369
DNA (1107bp) protein (369aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003743106
mandelate racemase/muconate lactonizing enzyme
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1220_curated_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6445..6870
DNA (426bp) protein (142aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1220_curated_10
bacterium YEK0313, Bacteria

Not on your lists

comp(6876..7742)
DNA (867bp) protein (289aa)
endonuclease n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D31338
Xylose isomerase-like TIM barrel {ECO:0000313|EMBL:CEJ15037.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
conserved protein of unknown function [Xylose isomerase-type TIM barrel domain]
SCNpilot_cont_300_bf_scaffold_1220_curated_11
bacterium YEK0313, Bacteria

Not on your lists

comp(7751..8920)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYI8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CEJ15038.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1220_curated_12
bacterium YEK0313, Bacteria

Not on your lists

comp(8946..10097)
DNA (1152bp) protein (384aa)
Putative dehydrogenase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYI9_9RHIZ
1,5-anhydro-D-fructose reductase {ECO:0000313|EMBL:CEJ15039.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
oxidoreductase
SCNpilot_cont_300_bf_scaffold_1220_curated_13
bacterium YEK0313, Bacteria

Not on your lists

comp(10303..11136)
DNA (834bp) protein (278aa)
ABC transporter ATP-binding protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I616_AZOC5
Bicarbonate transport ATP-binding protein CmpD {ECO:0000313|EMBL:CEJ15041.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_1220_curated_14
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11144..12142)
DNA (999bp) protein (333aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYJ2_9RHIZ
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:EIM29034.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
putative ABC transporter, periplasmic component
SCNpilot_cont_300_bf_scaffold_1220_curated_15
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12183..12998)
DNA (816bp) protein (272aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYJ3_9RHIZ
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:EIM29035.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ABC transporter permease; K02050 NitT/TauT family transport system permease protein
SCNpilot_cont_300_bf_scaffold_1220_curated_16
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13086..13745)
DNA (660bp) protein (220aa)
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYJ4_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EIM29036.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
TetR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1220_curated_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13836..14309
DNA (474bp) protein (158aa)
UPF0178 protein MicloDRAFT_00016220 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYV8_9RHIZ
hypothetical protein; K09768 hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1220_curated_18
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14306..14977)
DNA (672bp) protein (224aa)
Family transcriptional regulator n=1 Tax=Ralstonia sp. PBA RepID=I9KSV9_9RALS
GntR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
SCNpilot_cont_300_bf_scaffold_1220_curated_19
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15077..16135
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QMB9_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EPX57648.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
taurine catabolism dioxygenase TauD/TfdA
SCNpilot_cont_300_bf_scaffold_1220_curated_20
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16185..17165
DNA (981bp) protein (327aa)
Bordetella uptake domain-containing protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SMM6_RHIET
bordetella uptake domain-containing protein
Bordetella uptake domain-containing protein {ECO:0000313|EMBL:AGS23307.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_cont_300_bf_scaffold_1220_curated_21
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17176..18147
DNA (972bp) protein (324aa)
Bordetella uptake domain-containing protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SMM6_RHIET
bordetella uptake domain-containing protein
Bordetella uptake domain-containing protein {ECO:0000313|EMBL:AGS23307.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_cont_300_bf_scaffold_1220_curated_22
R_NC10_66_22, NC10, Bacteria

Not on your lists

18252..19265
DNA (1014bp) protein (338aa)
Extracellular solute-binding protein family 1 n=1 Tax=Aminobacterium colombiense (strain DSM 12261 / ALA-1) RepID=D5EEQ8_AMICL
family 1 extracellular solute-binding protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
SCNpilot_cont_300_bf_scaffold_1220_curated_23
R_NC10_66_22, NC10, Bacteria

Not on your lists

19269..20969
DNA (1701bp) protein (567aa)
ABC transporter, permease protein n=1 Tax=Parasutterella excrementihominis YIT 11859 RepID=F3QGG7_9BURK
binding-protein-dependent transport system inner membrane protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
SCNpilot_cont_300_bf_scaffold_1220_curated_24
R_NC10_66_22, NC10, Bacteria

Not on your lists

20974..22035
DNA (1062bp) protein (354aa)
ABC transporter ATP-binding protein; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30] rbh
ABC transporter ATP-binding protein n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67JF1_SYMTH
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
SCNpilot_cont_300_bf_scaffold_1220_curated_25
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22039..23634)
DNA (1596bp) protein (532aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QJH1_9BRAD
ABC transporter peptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1220_curated_26
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23909..24913
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DR57_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:AHY52832.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
hypothetical protein; K02012 iron(III) transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_1220_curated_27
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24916..25908
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DR56_BRAJP
ABC transporter {ECO:0000313|EMBL:KJC61722.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1220_curated_28
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25947..27602
DNA (1656bp) protein (552aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DR55_BRAJP
ABC transporter permease protein {ECO:0000313|EMBL:AHY52834.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
hypothetical protein; K02011 iron(III) transport system permease protein
SCNpilot_cont_300_bf_scaffold_1220_curated_29
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27683..30073
DNA (2391bp) protein (797aa)
AsmA n=1 Tax=alpha proteobacterium BAL199 RepID=A8TZU8_9PROT
AsmA
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying 29 items

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