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SCNpilot_cont_300_bf_scaffold_1230_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1230_curated_1
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69..1238)
DNA (1170bp) protein (390aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Variovorax sp. CF313 RepID=J2KX75_9BURK
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFG67036.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
branched chain amino-acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
SCNpilot_cont_300_bf_scaffold_1230_curated_2
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1336..2388
DNA (1053bp) protein (351aa)
alcohol dehydrogenase; K00001 alcohol dehydrogenase [EC:1.1.1.1]
Alcohol dehydrogenase GroES domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HYG6_PARL1
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1230_curated_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2391..3371
DNA (981bp) protein (327aa)
methyltransferase small; K00564 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
rRNA (Guanine-N(2)-)-methyltransferase n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9SD01_PHAFV
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1230_curated_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3352..4131)
DNA (780bp) protein (260aa)
Hemolysin A; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
Hemolysin A n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SJB1_RHOPH
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1230_curated_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4149..4901
DNA (753bp) protein (251aa)
oxidoreductase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003611EC0
putative oxidoreductase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1230_curated_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4962..5624
DNA (663bp) protein (221aa)
peroxidase (EC:1.11.1.7)
Peroxidase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BUW2_9GAMM
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1230_curated_7
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5635..7044
DNA (1410bp) protein (470aa)
Amidase {ECO:0000313|EMBL:KJC54011.1}; EC=3.5.1.4 {ECO:0000313|EMBL:KJC54011.1};; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IUD0_9BRAD
SCNpilot_cont_300_bf_scaffold_1230_curated_8
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7181..9097)
DNA (1917bp) protein (639aa)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AP34_AZOBR
dxs2; 1-deoxy-D-xylulose 5-phosphate synthase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1230_curated_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9137..10057)
DNA (921bp) protein (307aa)
ispA; geranyltranstransferase (EC:2.5.1.10); K00795 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
Octaprenyl-diphosphate synthase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GXX6_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1230_curated_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10067..10321)
DNA (255bp) protein (85aa)
xseB; Exonuclease VII small subunit; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00035D1BAA
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1230_curated_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10613..11548
DNA (936bp) protein (312aa)
Transcriptional regulator n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W423_MAGSA
transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1230_curated_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11585..12061
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Halomonas sp. PBN3 RepID=U7NIT1_9GAMM
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1230_curated_13
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12062..12763)
DNA (702bp) protein (234aa)
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193)
Putative 5-amino-6-(5-phosphoribosylamino)uracil reductase n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YQM5_BRASO
DNA, contig: SP652 {ECO:0000313|EMBL:GAN15233.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_cont_300_bf_scaffold_1230_curated_14
Burkholderia sp. TJI49, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13025..13600)
DNA (576bp) protein (192aa)
2h phosphoesterase LigT (EC:6.5.1.-); K01975 2'-5' RNA ligase [EC:6.5.1.-]
2'-5' RNA ligase n=1 Tax=Burkholderia sp. TJI49 RepID=F0FX42_9BURK
2'-5' RNA ligase {ECO:0000313|EMBL:EGD06200.1}; TaxID=987057 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. TJI49.;"
SCNpilot_cont_300_bf_scaffold_1230_curated_15
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13632..14177)
DNA (546bp) protein (182aa)
2',5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-]
2'-5' RNA ligase n=1 Tax=Caulobacter sp. AP07 RepID=J2PR27_9CAUL
2'-5' RNA ligase {ECO:0000313|EMBL:EJL30132.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
SCNpilot_cont_300_bf_scaffold_1230_curated_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(14317..14766)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Leucobacter chromiiresistens RepID=UPI000262B2BA
Transcription activator effector binding protein {ECO:0000313|EMBL:AHG92355.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
SCNpilot_cont_300_bf_scaffold_1230_curated_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14887..15681)
DNA (795bp) protein (265aa)
hydratase/decarboxylase (EC:4.1.1.77); K01617 4-oxalocrotonate decarboxylase [EC:4.1.1.77]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003725400
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1230_curated_18
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15852..18101)
DNA (2250bp) protein (750aa)
fadJ; fatty acid oxidation complex alpha subunit (EC:1.1.1.35 4.2.1.17 5.1.2.3); K01782 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
Fatty acid oxidation complex alpha subunit n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ITC2_RHOCS
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1230_curated_19
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18124..19335)
DNA (1212bp) protein (404aa)
acetyl-CoA acetyltransferase (EC:2.3.1.16); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ACS65110.1}; EC=2.3.1.16 {ECO:0000313|EMBL:ACS65110.1};; TaxID=428406 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12D).;"
Acetyl-CoA acetyltransferase n=2 Tax=Ralstonia pickettii RepID=B2UKB1_RALPJ
SCNpilot_cont_300_bf_scaffold_1230_curated_20
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19493..20632)
DNA (1140bp) protein (380aa)
acyl-CoA dehydrogenase n=1 Tax=Pseudomonas fluorescens RepID=UPI0002E5491D
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ERP43274.1}; TaxID=1221522 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens NCIMB 11764.;"
acyl-CoA dehydrogenase
SCNpilot_cont_300_bf_scaffold_1230_curated_21
Brevibacillus borstelensis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20743..21126)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Brevibacillus borstelensis AK1 RepID=M8DMI2_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EMT54672.1}; TaxID=1300222 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus borstelensis AK1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1230_curated_22
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21155..21754
DNA (600bp) protein (200aa)
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKF3_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EIM24445.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
TetR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1230_curated_23
unknown

Not on your lists

comp(21824..22129)
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1230_curated_24
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22310..23206)
DNA (897bp) protein (299aa)
Putative transcriptional regulator n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IJ97_AZOC5
lysR; transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:BAF86269.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_1230_curated_25
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23264..24652
DNA (1389bp) protein (463aa)
hypothetical protein n=1 Tax=Halomonas sp. BJGMM-B45 RepID=UPI0003AEB430
Uncharacterized protein {ECO:0000313|EMBL:EYF06973.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
norM; MATE efflux family protein
SCNpilot_cont_300_bf_scaffold_1230_curated_26
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24630..26144)
DNA (1515bp) protein (505aa)
3-hydroxy-acyl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
3-hydroxy-acyl-CoA dehydrogenase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JXN1_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1230_curated_27
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26215..28134)
DNA (1920bp) protein (640aa)
Propionyl-CoA synthetase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AKB1_AZOBR
prpE; propionyl-CoA synthetase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_1230_curated_28
unknown

Not on your lists

28239..28775
DNA (537bp) protein (179aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1230_curated_29
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28835..29800
DNA (966bp) protein (322aa)
Uncharacterized protein UPF0065 n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WNK6_VEREI
hypothetical protein
Uncharacterized protein UPF0065 {ECO:0000313|EMBL:ABM59213.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_cont_300_bf_scaffold_1230_curated_30
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29852..30817
DNA (966bp) protein (322aa)
Uncharacterized protein UPF0065 n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WNK6_VEREI
hypothetical protein
Uncharacterized protein UPF0065 {ECO:0000313|EMBL:ABM59213.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
Displaying items 1-30 of 33 in total

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