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SCNpilot_expt_1000_bf_scaffold_852_curated

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_852_curated_1
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..807
DNA (807bp) protein (269aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:ESR25599.1}; EC=1.2.1.3 {ECO:0000313|EMBL:ESR25599.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00036F56C6
aldehyde dehydrogenase
SCNpilot_expt_1000_bf_scaffold_852_curated_2
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

890..1858
DNA (969bp) protein (323aa)
methionyl-tRNA formyltransferase; K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036B267D
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_expt_1000_bf_scaffold_852_curated_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1868..2965)
DNA (1098bp) protein (366aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00037CDCAA
Membrane protein {ECO:0000313|EMBL:KIZ39162.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_852_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3320..3835)
DNA (516bp) protein (172aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKY9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41394.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_852_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4000..5400)
DNA (1401bp) protein (467aa)
Vanillin dehydrogenase {ECO:0000313|EMBL:AKH42969.1}; EC=1.2.1.67 {ECO:0000313|EMBL:AKH42969.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Vanillin dehydrogenase n=2 Tax=Sphingomonadaceae RepID=G2IMC6_9SPHN
ligV; vanillin dehydrogenase
SCNpilot_expt_1000_bf_scaffold_852_curated_6
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5546..8014)
DNA (2469bp) protein (823aa)
UPI0003D01400 related cluster n=1 Tax=unknown RepID=UPI0003D01400
TonB-denpendent receptor {ECO:0000313|EMBL:ESZ86409.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
TonB-dependent receptor-like protein
SCNpilot_expt_1000_bf_scaffold_852_curated_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8086..8580
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0003080573
Transcriptional regulator SlyA {ECO:0000313|EMBL:AKH43100.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_852_curated_8

Not on your lists

8641..9528
DNA (888bp) protein (296aa)
Lipase/esterase n=1 Tax=uncultured bacterium RepID=A9UKK3_9BACT
Lipase/esterase {ECO:0000313|EMBL:AAX37300.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
peptidase-like protein
SCNpilot_expt_1000_bf_scaffold_852_curated_9
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9746..10063)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2DPM0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41377.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_1000_bf_scaffold_852_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10195..11490)
DNA (1296bp) protein (432aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EB70_9SPHN
L-galactonate transporter {ECO:0000313|EMBL:AKH42890.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_852_curated_11
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11597..12652)
DNA (1056bp) protein (352aa)
aminocarboxymuconate-semialdehyde decarboxylase (EC:4.1.1.45); K03392 aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45]
Aminocarboxymuconate-semialdehyde decarboxylase {ECO:0000313|EMBL:CCA94036.1}; EC=4.1.1.45 {ECO:0000313|EMBL:CCA94036.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Aminocarboxymuconate-semialdehyde decarboxylase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II05_9SPHN
SCNpilot_expt_1000_bf_scaffold_852_curated_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12649..13938)
DNA (1290bp) protein (430aa)
Fumarylacetoacetate hydrolase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EB72_9SPHN
Fumarylacetoacetate (FAA) hydrolase family protein {ECO:0000313|EMBL:AKH42888.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
putative fumarylacetoacetase
SCNpilot_expt_1000_bf_scaffold_852_curated_13
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13928..14911)
DNA (984bp) protein (328aa)
Hydroxyacylglutathione hydrolase {ECO:0000313|EMBL:AKH42887.1}; EC=3.1.2.6 {ECO:0000313|EMBL:AKH42887.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Beta-lactamase domain-containing protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II03_9SPHN
beta-lactamase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_852_curated_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15023..15685
DNA (663bp) protein (221aa)
TetR family transcriptional regulator n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II02_9SPHN
Transcriptional regulator BetI {ECO:0000313|EMBL:AKH42886.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_852_curated_15
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15682..16644)
DNA (963bp) protein (321aa)
Ureidoglycolate lyase {ECO:0000313|EMBL:AKH42885.1}; EC=4.3.2.3 {ECO:0000313|EMBL:AKH42885.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
5-carboxymethyl-2-hydroxymuconate delta-isomerase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II01_9SPHN
SCNpilot_expt_1000_bf_scaffold_852_curated_16
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16653..17771)
DNA (1119bp) protein (373aa)
FAD-dependent urate hydroxylase {ECO:0000313|EMBL:AKH42884.1}; EC=1.14.13.113 {ECO:0000313|EMBL:AKH42884.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II00_9SPHN
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_852_curated_17
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17799..18707)
DNA (909bp) protein (303aa)
Biphenyl-2,3-diol 1,2-dioxygenase {ECO:0000313|EMBL:AKH42883.1}; EC=1.13.11.39 {ECO:0000313|EMBL:AKH42883.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Glyoxalase-family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKY6_9SPHN
glyoxalase-family protein
SCNpilot_expt_1000_bf_scaffold_852_curated_18
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18736..21204)
DNA (2469bp) protein (823aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKY7_9SPHN
Ferripyoverdine receptor {ECO:0000313|EMBL:AKH42882.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TonB-dependent receptor-like protein
SCNpilot_expt_1000_bf_scaffold_852_curated_19
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21380..22354)
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GG17_9SPHN
AraC family transcriptional regulator {ECO:0000313|EMBL:EZP71396.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
transcriptional regulator, AraC family
SCNpilot_expt_1000_bf_scaffold_852_curated_20
Streptomyces sp. HGB0020, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22490..23818
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI00037E26D6
Uncharacterized protein {ECO:0000313|EMBL:EPD63996.1}; TaxID=1078086 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HGB0020.;"
glycine cleavage T protein (aminomethyl transferase)
SCNpilot_expt_1000_bf_scaffold_852_curated_21
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23879..24727
DNA (849bp) protein (283aa)
2-(R)-hydroxypropyl-CoM dehydrogenase {ECO:0000313|EMBL:AKH42880.1}; EC=1.1.1.268 {ECO:0000313|EMBL:AKH42880.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IME4_9SPHN
putative oxidoreductase
SCNpilot_expt_1000_bf_scaffold_852_curated_22
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24720..25496
DNA (777bp) protein (259aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase {ECO:0000313|EMBL:BAK65398.1}; EC=2.5.1.18 {ECO:0000313|EMBL:BAK65398.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Glutathione S-transferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IME3_9SPHN
SCNpilot_expt_1000_bf_scaffold_852_curated_23
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25511..27115)
DNA (1605bp) protein (535aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002E386DB
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:EHJ61444.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
glucose-methanol-choline oxidoreductase
SCNpilot_expt_1000_bf_scaffold_852_curated_24
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27123..27575)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003678893
Uncharacterized protein {ECO:0000313|EMBL:AKH42236.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_852_curated_25
unknown

Not on your lists

comp(27577..27801)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_852_curated_26
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27999..29471)
DNA (1473bp) protein (491aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00036C87EC
Aldehyde dehydrogenase (NAD+) {ECO:0000313|EMBL:EBA07797.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
NAD-dependent aldehyde dehydrogenase
SCNpilot_expt_1000_bf_scaffold_852_curated_27
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29682..30608
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002F62A46
helix-turn-helix domain-containing protein
Helix-turn-helix domain-containing protein {ECO:0000313|EMBL:AFU47167.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_852_curated_28
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30753..32081
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003132D03
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:KDB07234.1}; TaxID=1192124 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. lig30.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_852_curated_29
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32100..32594)
DNA (495bp) protein (165aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQT1_9SPHN
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
SCNpilot_expt_1000_bf_scaffold_852_curated_30
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33036..34226
DNA (1191bp) protein (397aa)
Integrase n=1 Tax=alpha proteobacterium JLT2015 RepID=M2T5V3_9PROT
Integrase {ECO:0000313|EMBL:EMD81844.1}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
symbiosis island integrase
Displaying items 1-30 of 37 in total

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