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SCNpilot_expt_1000_bf_scaffold_678_curated

Search features with annotation key words

Displaying items 31-60 of 106 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_678_curated_31
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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35477..35875
DNA (399bp) protein (133aa)
pcaC; 4-carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
4-carboxymuconolactone decarboxylase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH6_9SPHN
Carboxymuconolactone decarboxylase family protein {ECO:0000313|EMBL:AKH43196.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_1000_bf_scaffold_678_curated_32
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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35875..36351
DNA (477bp) protein (159aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66685.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_678_curated_33
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36348..36761
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH4_9SPHN
SnoaL-like domain protein {ECO:0000313|EMBL:AKH43195.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_678_curated_34
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36764..37516
DNA (753bp) protein (251aa)
Diacetyl reductase {ECO:0000313|EMBL:AKH43194.1}; EC=1.1.1.304 {ECO:0000313|EMBL:AKH43194.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
LinC-like SDR-family protein; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
LinC-like SDR-family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH3_9SPHN
SCNpilot_expt_1000_bf_scaffold_678_curated_35
unknown

Not on your lists

comp(37500..38363)
DNA (864bp) protein (288aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_678_curated_36
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38567..38779
DNA (213bp) protein (71aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH2_9SPHN
Penicillin-binding protein 4 {ECO:0000313|EMBL:AKH43193.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
putative hydrolase
SCNpilot_expt_1000_bf_scaffold_678_curated_37
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38909..40486
DNA (1578bp) protein (526aa)
Dehydrosqualene desaturase {ECO:0000313|EMBL:AKH43192.1}; EC=1.3.8.2 {ECO:0000313|EMBL:AKH43192.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH1_9SPHN
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_678_curated_38
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40598..40810
DNA (213bp) protein (71aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43191.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_678_curated_39
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40810..41595
DNA (786bp) protein (262aa)
Levodione reductase {ECO:0000313|EMBL:AKH43190.1}; EC=1.1.1.- {ECO:0000313|EMBL:AKH43190.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
LinC-like SDR-family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITG9_9SPHN
LinC-like SDR-family protein
SCNpilot_expt_1000_bf_scaffold_678_curated_40
Hyphomonas chukchiensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41637..41900
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P8S8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KCZ56323.1}; TaxID=1280947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
phage/conjugal plasmid C-4 type zinc finger protein, TraR family
SCNpilot_expt_1000_bf_scaffold_678_curated_41
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42028..42903)
DNA (876bp) protein (292aa)
Putative uncharacterized protein n=1 Tax=Rhodobacteraceae bacterium HTCC2083 RepID=B6AU52_9RHOB
nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein; K02051 NitT/TauT family transport system substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_678_curated_42
Pandoraea sputorum, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(42933..43688)
DNA (756bp) protein (252aa)
Putative GntR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMY4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJC17891.1}; TaxID=93222 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sputorum.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_678_curated_43
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44072..46741)
DNA (2670bp) protein (890aa)
Aminopeptidase N {ECO:0000313|EMBL:AKH43113.1}; EC=3.4.11.2 {ECO:0000313|EMBL:AKH43113.1};; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
peptidase M1, membrane alanine aminopeptidase; K01256 aminopeptidase N [EC:3.4.11.2]
Peptidase M1, membrane alanine aminopeptidase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB82_NOVAD
SCNpilot_expt_1000_bf_scaffold_678_curated_44
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46810..48177)
DNA (1368bp) protein (456aa)
Osmolarity sensor protein EnvZ {ECO:0000313|EMBL:AKH43112.1}; EC=2.7.13.3 {ECO:0000313|EMBL:AKH43112.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB83_NOVAD
periplasmic sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_678_curated_45
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48177..48914)
DNA (738bp) protein (246aa)
Two component transcriptional regulator n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6ECA1_9SPHN
Transcriptional regulatory protein OmpR {ECO:0000313|EMBL:AKH43111.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
two component transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_678_curated_46
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(49180..49590)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Acaryochloris marina (strain MBIC 11017) RepID=B0C110_ACAM1
hypothetical protein
Tax=RBG_16_Gamma2_60_9_curated
SCNpilot_expt_1000_bf_scaffold_678_curated_47
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49613..51418)
DNA (1806bp) protein (602aa)
Xaa-Pro dipeptidase {ECO:0000313|EMBL:AKH43108.1}; EC=3.4.13.9 {ECO:0000313|EMBL:AKH43108.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
peptidase M24; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9]
Peptidase M24 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB87_NOVAD
SCNpilot_expt_1000_bf_scaffold_678_curated_48
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51447..53519
DNA (2073bp) protein (691aa)
Protease 2 {ECO:0000313|EMBL:AKH43107.1}; EC=3.4.21.83 {ECO:0000313|EMBL:AKH43107.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
oligopeptidase B (EC:3.4.21.83); K01354 oligopeptidase B [EC:3.4.21.83]
Oligopeptidase B, Serine peptidase, MEROPS family S09A n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB88_NOVAD
SCNpilot_expt_1000_bf_scaffold_678_curated_49
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53684..54580)
DNA (897bp) protein (299aa)
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:AKH43185.1}; EC=1.1.1.31 {ECO:0000313|EMBL:AKH43185.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
3-hydroxyisobutyrate dehydrogenase-related protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH8_9SPHN
3-hydroxyisobutyrate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_678_curated_50
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54577..55386)
DNA (810bp) protein (270aa)
N-acyl homoserine lactonase {ECO:0000313|EMBL:AKH43184.1}; EC=3.1.1.81 {ECO:0000313|EMBL:AKH43184.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH9_9SPHN
putative hydrolase
SCNpilot_expt_1000_bf_scaffold_678_curated_51
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55517..56701)
DNA (1185bp) protein (395aa)
Biotin biosynthesis cytochrome P450 {ECO:0000313|EMBL:AKH43183.1}; EC=1.14.15.12 {ECO:0000313|EMBL:AKH43183.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative cytochrome P450 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITI0_9SPHN
cytochrome P450
SCNpilot_expt_1000_bf_scaffold_678_curated_52
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56698..57615)
DNA (918bp) protein (306aa)
Putative quorum-quenching lactonase YtnP {ECO:0000313|EMBL:AKH43182.1}; EC=3.1.1.- {ECO:0000313|EMBL:AKH43182.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITI1_9SPHN
putative hydrolase
SCNpilot_expt_1000_bf_scaffold_678_curated_53
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57597..58100)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GVC8_SPHAL
Uncharacterized protein {ECO:0000313|EMBL:KGB55229.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_678_curated_54
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58097..59767)
DNA (1671bp) protein (557aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:AKH43181.1}; EC=1.1.99.- {ECO:0000313|EMBL:AKH43181.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITI2_9SPHN
putative oxidoreductase
SCNpilot_expt_1000_bf_scaffold_678_curated_55
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60305..61087)
DNA (783bp) protein (261aa)
citrate synthase; K01647 citrate synthase [EC:2.3.3.1]
UPI0003CFDC17 related cluster n=1 Tax=unknown RepID=UPI0003CFDC17
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_expt_1000_bf_scaffold_678_curated_56
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61259..62389
DNA (1131bp) protein (377aa)
UPI0003D05D6B related cluster n=1 Tax=unknown RepID=UPI0003D05D6B
L-carnitine dehydratase/bile acid-inducible protein F
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_expt_1000_bf_scaffold_678_curated_57
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62643..63179
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI00031A6D2B
glyoxalase/bleomycin resistance protein/dioxygenase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_expt_1000_bf_scaffold_678_curated_58
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63316..64347
DNA (1032bp) protein (344aa)
Wenxma_15, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ68158.1}; EC=2.1.1.14 {ECO:0000313|EMBL:KIQ68158.1};; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
vitamin-B12 independent methionine synthase; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI000382A61E
SCNpilot_expt_1000_bf_scaffold_678_curated_59
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64344..65465
DNA (1122bp) protein (374aa)
vitamin-B12 independent methionine synthase; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
UPI0003D04726 related cluster n=1 Tax=unknown RepID=UPI0003D04726
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_expt_1000_bf_scaffold_678_curated_60
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65472..68228)
DNA (2757bp) protein (919aa)
[protein-PII] uridylyltransferase (EC:2.7.7.59); K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59]
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZTH7_9SPHN
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000313|EMBL:AKH43092.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Displaying items 31-60 of 106 in total

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