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SCNpilot_expt_1000_bf_scaffold_678_curated

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Displaying items 1-30 of 106 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_678_curated_1
Roseovarius sp. 217, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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69..1235
DNA (1167bp) protein (389aa)
Transcriptional regulator, LuxR family protein n=1 Tax=Roseovarius sp. 217 RepID=A3W6Q6_9RHOB
Transcriptional regulator, LuxR family protein {ECO:0000313|EMBL:EAQ23892.1}; TaxID=314264 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. 217.;"
Transcriptional regulator, LuxR family protein
SCNpilot_expt_1000_bf_scaffold_678_curated_2
Roseovarius sp. 217, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1472..2131
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. 217 RepID=A3W6Q7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ23893.1}; TaxID=314264 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. 217.;"
SCNpilot_expt_1000_bf_scaffold_678_curated_3
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3631..3819
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036221B1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH49412.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_678_curated_4
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4151..5446)
DNA (1296bp) protein (432aa)
integrase n=1 Tax=Elioraea tepidiphila RepID=UPI000361A899
Integrase {ECO:0000313|EMBL:CCW19221.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
phage integrase family protein
SCNpilot_expt_1000_bf_scaffold_678_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5638..6411
DNA (774bp) protein (258aa)
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRB6_9SPHN
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAK68482.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_678_curated_6
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6464..8233
DNA (1770bp) protein (590aa)
Copper-binding protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0HPA0_9SPHN
CopA family copper-resistance protein
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_1000_bf_scaffold_678_curated_7
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8230..9237
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HPS2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB15052.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
copper resistance B
SCNpilot_expt_1000_bf_scaffold_678_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9254..10063)
DNA (810bp) protein (270aa)
Putative hydrolase YxeP {ECO:0000313|EMBL:AKH43216.1}; EC=3.-.-.- {ECO:0000313|EMBL:AKH43216.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
peptidase M20D, amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32]
amidohydrolase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6236A
SCNpilot_expt_1000_bf_scaffold_678_curated_9
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11459..11674
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IFL8_9SPHN
Putative lipid kinase {ECO:0000313|EMBL:AKH43215.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_678_curated_10
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11671..12558
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKG9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KEO96502.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_678_curated_11
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12716..13207)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N6T4_ERYLH
Uncharacterized protein {ECO:0000313|EMBL:AKH43213.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_678_curated_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13434..14096
DNA (663bp) protein (221aa)
Ribulose-phosphate 3-epimerase {ECO:0000313|EMBL:AKH43212.1}; EC=5.1.3.1 {ECO:0000313|EMBL:AKH43212.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ribulose-5-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
Ribulose-phosphate 3-epimerase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5T9_9SPHN
SCNpilot_expt_1000_bf_scaffold_678_curated_13
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14093..15961
DNA (1869bp) protein (623aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A203_9SPHN
Heparinase II/III-like protein {ECO:0000313|EMBL:AKH43211.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
heparinase II/III-like
SCNpilot_expt_1000_bf_scaffold_678_curated_14
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15968..17557
DNA (1590bp) protein (530aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3 3.5.4.10); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
Bifunctional purine biosynthesis protein PurH n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N6U1_ERYLH
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
SCNpilot_expt_1000_bf_scaffold_678_curated_15
unknown

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17677..17775
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_678_curated_16
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17772..18440
DNA (669bp) protein (223aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000313|EMBL:AKH43208.1}; EC=1.8.4.11 {ECO:0000313|EMBL:AKH43208.1};; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
methionine sulfoxide reductase A (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003187828
SCNpilot_expt_1000_bf_scaffold_678_curated_17
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18499..18960
DNA (462bp) protein (154aa)
Transcriptional regulator n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z612_9SPHN
Zinc uptake regulation protein {ECO:0000313|EMBL:AKH43207.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Fur family transcriptional regulator, zinc uptake regulator; K09823 Fur family transcriptional regulator, zinc uptake regulator
SCNpilot_expt_1000_bf_scaffold_678_curated_18
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19046..20968
DNA (1923bp) protein (641aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000313|EMBL:AKH43206.1}; EC=2.2.1.7 {ECO:0000313|EMBL:AKH43206.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7); K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZTR6_9SPHN
SCNpilot_expt_1000_bf_scaffold_678_curated_19
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20970..22067
DNA (1098bp) protein (366aa)
LuxR family transcriptional regulator n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD07CC
LuxR family transcriptional regulator
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:ADG10045.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_expt_1000_bf_scaffold_678_curated_20
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22174..22965
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAV9_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25014.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_678_curated_21
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22972..24579)
DNA (1608bp) protein (536aa)
MFS transporter n=1 Tax=Blastomonas sp. AAP53 RepID=UPI00037F05E1
MFS transporter {ECO:0000313|EMBL:ESZ85645.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
amino acid/peptide transporter
SCNpilot_expt_1000_bf_scaffold_678_curated_22
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24724..25062
DNA (339bp) protein (113aa)
Transcriptional regulator, GntR family protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P990_9SPHN
HTH-type transcriptional repressor YtrA {ECO:0000313|EMBL:AKH43201.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
GntR family transcriptional regulator protein
SCNpilot_expt_1000_bf_scaffold_678_curated_23
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25223..25504
DNA (282bp) protein (94aa)
transcriptional regulator n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI00030C059C
Integration host factor subunit beta {ECO:0000313|EMBL:AKH43200.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Integration host factor subunit beta; K05788 integration host factor subunit beta
SCNpilot_expt_1000_bf_scaffold_678_curated_24
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25612..28221)
DNA (2610bp) protein (870aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQP3_9SPHN
Ferripyoverdine receptor {ECO:0000313|EMBL:AKH43199.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TonB-dependent receptor-like protein
SCNpilot_expt_1000_bf_scaffold_678_curated_25
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28586..29875
DNA (1290bp) protein (430aa)
MFS transporter n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6AE66
major facilitator superfamily protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
SCNpilot_expt_1000_bf_scaffold_678_curated_26
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29872..31077
DNA (1206bp) protein (402aa)
Para-nitrophenol 4-monooxygenase n=1 Tax=Burkholderia sp. SJ98 RepID=K8RK08_9BURK
para-nitrophenol 4-monooxygenase
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_expt_1000_bf_scaffold_678_curated_27
bacterium YEK0313, Bacteria

Not on your lists

31074..31865
DNA (792bp) protein (264aa)
Alpha/beta hydrolase fold n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X659_OCHA4
4,5:9,10-diseco-3-hydroxy-5,9, 17-trioxoandrosta-1(10),2-diene-4-oate hydrolase {ECO:0000313|EMBL:CEJ13069.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
alpha/beta hydrolase
SCNpilot_expt_1000_bf_scaffold_678_curated_28
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31876..32685
DNA (810bp) protein (270aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP32_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43198.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_678_curated_29
Gordonia otitidis, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32823..34007)
DNA (1185bp) protein (395aa)
Putative monooxygenase n=1 Tax=Gordonia otitidis NBRC 100426 RepID=H5THA5_9ACTO
Putative monooxygenase {ECO:0000313|EMBL:GAB32863.1}; TaxID=1108044 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia otitidis NBRC 100426.;"
para-nitrophenol 4-monooxygenase
SCNpilot_expt_1000_bf_scaffold_678_curated_30
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34111..35346
DNA (1236bp) protein (412aa)
Beta-lactamase {ECO:0000313|EMBL:AKH43197.1}; EC=3.5.2.6 {ECO:0000313|EMBL:AKH43197.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH7_9SPHN
putative hydrolase
Displaying items 1-30 of 106 in total

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