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SCNpilot_expt_1000_bf_scaffold_819_curated

Search features with annotation key words

Displaying items 31-60 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_819_curated_31
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27553..28029)
DNA (477bp) protein (159aa)
Transcriptional repressor NrdR n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IPC5_9SPHN
NrdR family transcriptional regulator; K07738 transcriptional repressor NrdR
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
SCNpilot_expt_1000_bf_scaffold_819_curated_32
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28036..28251)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P791_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EDL50192.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_819_curated_33
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28255..29571)
DNA (1317bp) protein (439aa)
Serine hydroxymethyltransferase 1 {ECO:0000313|EMBL:AKH41474.1}; EC=2.1.2.1 {ECO:0000313|EMBL:AKH41474.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
glyA; serine hydroxymethyltransferase; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1]
Serine hydroxymethyltransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YMB8_9SPHN
SCNpilot_expt_1000_bf_scaffold_819_curated_34
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29576..30031)
DNA (456bp) protein (152aa)
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:AKH41475.1}; EC=5.3.1.6 {ECO:0000313|EMBL:AKH41475.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
rpiB; ribose 5-phosphate isomerase B; K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6]
Ribose 5-phosphate isomerase B n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILQ5_9SPHN
SCNpilot_expt_1000_bf_scaffold_819_curated_35
BJP_IG2158_Rhodobacterales_69_12, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30654..31013
DNA (360bp) protein (120aa)
GTP:adenosylcobinamide-phosphate guanylyltransferase, partial n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B31B2E
hypothetical protein
Tax=BJP_IG2158_Rhodobacterales_69_12
SCNpilot_expt_1000_bf_scaffold_819_curated_36
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31014..31667
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002F1DAFC
HAD-superfamily hydrolase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_1000_bf_scaffold_819_curated_37
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31671..32837
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0EPP3_CAUCE
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_1000_bf_scaffold_819_curated_38
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32984..35029)
DNA (2046bp) protein (682aa)
RNA polymerase sigma factor RpoD n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YMY4_9SPHN
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
RNA polymerase primary sigma factor; K03086 RNA polymerase primary sigma factor
SCNpilot_expt_1000_bf_scaffold_819_curated_39
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35026..36912)
DNA (1887bp) protein (629aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
DNA primase; K02316 DNA primase [EC:2.7.7.-]
DNA primase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y993_9SPHN
SCNpilot_expt_1000_bf_scaffold_819_curated_40
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36906..37103)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2G0W7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL23220.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_819_curated_41
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37990..39237
DNA (1248bp) protein (416aa)
carbamoyl phosphate synthase small subunit (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
Carbamoyl-phosphate synthase small chain n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NAR2_ERYLH
SCNpilot_expt_1000_bf_scaffold_819_curated_42
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39338..42661
DNA (3324bp) protein (1108aa)
Carbamoyl-phosphate synthase large chain {ECO:0000313|EMBL:AKH41483.1}; EC=6.3.5.5 {ECO:0000313|EMBL:AKH41483.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase large chain n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E6R2_9SPHN
SCNpilot_expt_1000_bf_scaffold_819_curated_43
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42762..43229
DNA (468bp) protein (156aa)
transcription elongation factor GreA n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225DF33
Transcription elongation factor GreA {ECO:0000313|EMBL:AKH41484.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
greA; transcription elongation factor GreA; K03624 transcription elongation factor GreA
SCNpilot_expt_1000_bf_scaffold_819_curated_44
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43781..44008)
DNA (228bp) protein (76aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IPD6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41485.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_819_curated_45
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44121..44624)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI00035E45B6
Uncharacterized protein {ECO:0000313|EMBL:AKH41486.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_1000_bf_scaffold_819_curated_46
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44621..44992)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P7A8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41487.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_819_curated_47
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44989..45420)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002E52D1A
Uncharacterized protein {ECO:0000313|EMBL:AKH41488.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_819_curated_48
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45417..45971)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WCH7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41489.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_819_curated_49
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46179..47450
DNA (1272bp) protein (424aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
Enolase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y988_9SPHN
SCNpilot_expt_1000_bf_scaffold_819_curated_50
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47647..49731
DNA (2085bp) protein (695aa)
peptidase M13; K07386 putative endopeptidase [EC:3.4.24.-]
peptidase M13 n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD103A
Endothelin-converting protein 1 {ECO:0000313|EMBL:ENY80033.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_1000_bf_scaffold_819_curated_51
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50024..51700)
DNA (1677bp) protein (559aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0E505_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:ENZ80653.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
ankyrin
SCNpilot_expt_1000_bf_scaffold_819_curated_52
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52087..52380)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002FD98F0
MerR family transcriptional regulator
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
SCNpilot_expt_1000_bf_scaffold_819_curated_53
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52822..53748)
DNA (927bp) protein (309aa)
General stress protein 69 {ECO:0000313|EMBL:AKH41491.1}; EC=1.1.1.- {ECO:0000313|EMBL:AKH41491.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2G0X9_9SPHN
aldo/keto reductase
SCNpilot_expt_1000_bf_scaffold_819_curated_54
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53745..54164)
DNA (420bp) protein (140aa)
6,7-dimethyl-8-ribityllumazine synthase 1 {ECO:0000313|EMBL:AKH41492.1}; EC=2.5.1.78 {ECO:0000313|EMBL:AKH41492.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B329E2
SCNpilot_expt_1000_bf_scaffold_819_curated_55
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54167..55414)
DNA (1248bp) protein (416aa)
ribA; GTP cyclohydrolase II (EC:3.5.4.25); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Novosphingobium sp. AP12 RepID=J2P804_9SPHN
Riboflavin biosynthesis protein RibBA {ECO:0000313|EMBL:AKH41493.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_1000_bf_scaffold_819_curated_56
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55586..56158
DNA (573bp) protein (191aa)
4-nitrophenol 4-monooxygenase/4-nitrocatechol 2-monooxygenase, reductase component {ECO:0000313|EMBL:AKH41494.1}; EC=1.14.13.166 {ECO:0000313|EMBL:AKH41494.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
reductase component of oxidoreductase (EC:1.5.1.30)
Putative oxidoreductase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YMX3_9SPHN
SCNpilot_expt_1000_bf_scaffold_819_curated_57
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56155..57129)
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5862E
Peptidase family M48 {ECO:0000313|EMBL:AKH41495.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_1000_bf_scaffold_819_curated_58
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58492..59640)
DNA (1149bp) protein (383aa)
(S)-mandelate dehydrogenase {ECO:0000313|EMBL:AKH41497.1}; EC=1.1.99.31 {ECO:0000313|EMBL:AKH41497.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
(S)-mandelate dehydrogenase n=1 Tax=Marinobacter sp. BSs20148 RepID=M1FBA0_9ALTE
mdlB; (S)-mandelate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_819_curated_59
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59648..60376)
DNA (729bp) protein (243aa)
Glucose 1-dehydrogenase {ECO:0000313|EMBL:AKH41498.1}; EC=1.1.1.47 {ECO:0000313|EMBL:AKH41498.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0INL0_9SPHN
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_819_curated_60
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60541..62568
DNA (2028bp) protein (676aa)
Elongation factor G n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RZY3_9SPHN
Elongation factor G {ECO:0000313|EMBL:KGB56268.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
elongation factor G
Displaying items 31-60 of 61 in total

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