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SCNpilot_expt_500_bf_scaffold_23_curated

Search features with annotation key words

Displaying items 1-30 of 365 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_23_curated_1
Aeromonas diversa, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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141..839
DNA (699bp) protein (233aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1268237 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas diversa 2478-85.;"
carbonic anhydrase; K01673 carbonic anhydrase [EC:4.2.1.1]
Carbonic anhydrase n=1 Tax=Aeromonas diversa 2478-85 RepID=N9VJJ3_9GAMM
SCNpilot_expt_500_bf_scaffold_23_curated_2
unknown

Not on your lists

comp(1199..1630)
DNA (432bp) protein (144aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_23_curated_3
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(1631..2203)
DNA (573bp) protein (191aa)
RNA polymerase sigma factor n=1 Tax=Rhodococcus erythropolis CCM2595 RepID=T1VPB6_RHOER
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AIE85695.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
RNA polymerase ECF-type sigma factor
SCNpilot_expt_500_bf_scaffold_23_curated_4
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

2285..3730
DNA (1446bp) protein (482aa)
Peptidase S10, serine carboxypeptidase n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3D4_GEOUR id=5223217 bin=16ft_combo_ws3_JS1 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Carboxypeptidase-related protein {ECO:0000313|EMBL:AIE87709.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
peptidase S10 serine carboxypeptidase
SCNpilot_expt_500_bf_scaffold_23_curated_5
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(3731..4486)
DNA (756bp) protein (252aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NHC1_ROSCS
Xylose isomerase domain-containing protein {ECO:0000313|EMBL:AIE83854.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
xylose isomerase domain-containing protein
SCNpilot_expt_500_bf_scaffold_23_curated_6
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

4505..6106
DNA (1602bp) protein (534aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
L-aspartate oxidase (EC:1.4.3.16)
L-aspartate oxidase n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EY63_9BACT
SCNpilot_expt_500_bf_scaffold_23_curated_7
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(6051..7850)
DNA (1800bp) protein (600aa)
Uncharacterized protein {ECO:0000313|EMBL:AIE84626.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_23_curated_8
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(7834..9942)
DNA (2109bp) protein (703aa)
Ig domain protein group 1 domain protein {ECO:0000313|EMBL:AIE84627.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
Organic solvent tolerance protein OstA
SCNpilot_expt_500_bf_scaffold_23_curated_9
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(9905..12697)
DNA (2793bp) protein (931aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B5711C
Uncharacterized protein {ECO:0000313|EMBL:AIE84628.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_23_curated_10
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(12769..14700)
DNA (1932bp) protein (644aa)
GE14321 n=1 Tax=Drosophila yakuba RepID=B4P9S5_DROYA
Uncharacterized protein {ECO:0000313|EMBL:AIE84630.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
GE14321 gene product from transcript GE14321-RA
SCNpilot_expt_500_bf_scaffold_23_curated_11
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(14947..15489)
DNA (543bp) protein (181aa)
coaE; dephospho-CoA kinase CoaE (EC:2.7.1.24)
Dephospho-CoA kinase {ECO:0000313|EMBL:AIE84631.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
Dephospho-CoA kinase id=3472723 bin=GWF2_Lentisphaerae_52_8 species=Hydrogenivirga sp. 128-5-R1-1 genus=Hydrogenivirga taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
SCNpilot_expt_500_bf_scaffold_23_curated_12
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


comp(15550..17250)
DNA (1701bp) protein (567aa)
30S ribosomal protein S1 n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EY09_9BACT
SSU ribosomal protein S1p {ECO:0000313|EMBL:AIE84632.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
Ribosomal protein S1
SCNpilot_expt_500_bf_scaffold_23_curated_13
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(17368..18807)
DNA (1440bp) protein (480aa)
xylB; xylulokinase (EC:2.7.1.17); K00854 xylulokinase [EC:2.7.1.17]
Xylulokinase n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YDM9_DICT6
Xylulokinase {ECO:0000313|EMBL:AIE84633.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_23_curated_14
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(18911..19186)
DNA (276bp) protein (92aa)
YHS domain protein n=1 Tax=Mycobacterium gilvum (strain PYR-GCK) RepID=A4T4K1_MYCGI
Uncharacterized protein {ECO:0000313|EMBL:AIE86322.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
YHS domain-containing protein
SCNpilot_expt_500_bf_scaffold_23_curated_15
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

19351..20016
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B60871
5'-Nucleotidase domain-containing protein {ECO:0000313|EMBL:AIE86321.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SLH and ushA domain-containing protein
SCNpilot_expt_500_bf_scaffold_23_curated_16
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(20018..20872)
DNA (855bp) protein (285aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
AGK1; acetylglutamate kinase-like protein (EC:2.7.2.8); K00930 acetylglutamate kinase [EC:2.7.2.8]
Acetylglutamate kinase n=1 Tax=Polytomella parva RepID=A6XGV3_9CHLO
SCNpilot_expt_500_bf_scaffold_23_curated_17
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

20970..21794
DNA (825bp) protein (275aa)
prolipoprotein diacylglyceryl transferase; K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-] id=12556575 bin=CNBR_ACIDO species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
lgt; prolipoprotein diacylglyceryl transferase Lgt (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase {ECO:0000313|EMBL:AIE87062.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_23_curated_18
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

21746..22759
DNA (1014bp) protein (338aa)
rfaE bifunctional protein, domain I (EC:2.7.1.-)
RfaE bifunctional protein, domain I n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LFF3_CHLTF
ADP-heptose synthase {ECO:0000313|EMBL:AIE87063.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_23_curated_19
unknown

Not on your lists

22824..23072
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_23_curated_20
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

23163..24239
DNA (1077bp) protein (359aa)
soxA; sarcosine oxidase (EC:1.5.3.1); K00301 sarcosine oxidase [EC:1.5.3.1]
Sarcosine oxidase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9P0E9_9DELT
Monomeric sarcosine oxidase {ECO:0000313|EMBL:AIE84802.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_23_curated_21
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

24321..26663
DNA (2343bp) protein (781aa)
Uncharacterized protein {ECO:0000313|EMBL:AIE84801.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_23_curated_22
RBG_13_Aminicenantes_63_10_curated, Aminicenantes, Bacteria

Not on your lists

26682..27362
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI000365F7C8
ErfK/YbiS/YcfS/YnhG family protein
Tax=RBG_13_Aminicenantes_63_10_curated
SCNpilot_expt_500_bf_scaffold_23_curated_23
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

27444..29960
DNA (2517bp) protein (839aa)
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) (EC:5.4.2.8)
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (EIF-2Bgamma/eIF-2Bepsilon) n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EVF9_9BACT
Mannose-1-phosphate guanylyltransferase {ECO:0000313|EMBL:AIE84798.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_23_curated_24
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

30127..33042
DNA (2916bp) protein (972aa)
hypothetical protein n=1 Tax=Methylophilus RepID=UPI00036E48EF
Uncharacterized protein {ECO:0000313|EMBL:GAL83595.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_23_curated_25
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

33275..34222
DNA (948bp) protein (316aa)
Predicted xylanase/chitin deacetylase n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EUA4_9BACT
Polysaccharide deacetylase {ECO:0000313|EMBL:AIE85631.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
Predicted xylanase/chitin deacetylase
SCNpilot_expt_500_bf_scaffold_23_curated_26
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(34307..35110)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Providencia rettgeri Dmel1 RepID=K8VZS1_PRORE
Metal-dependent hydrolase of the beta-lactamase superfamily I {ECO:0000313|EMBL:AIE85456.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
Metal-dependent hydrolases of the beta-lactamase superfamily I
SCNpilot_expt_500_bf_scaffold_23_curated_27
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(35115..36392)
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KMX6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:AIE85454.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_23_curated_28
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

36600..37322
DNA (723bp) protein (241aa)
farnesyl-diphosphate synthase (EC:2.5.1.10 2.5.1.1 2.5.1.29)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI00035EECDC
Polyprenyl synthetase {ECO:0000313|EMBL:AIE85455.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_23_curated_29
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

37448..38575
DNA (1128bp) protein (376aa)
Cell division protein FtsZ n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EWT9_9BACT
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
cell division protein FtsZ
SCNpilot_expt_500_bf_scaffold_23_curated_30
unknown

Not on your lists

38696..39472
DNA (777bp) protein (259aa)

This feature has no annotations

Displaying items 1-30 of 365 in total

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