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SCNpilot_expt_500_bf_scaffold_1499_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1499_curated_1
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

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comp(327..3299)
DNA (2973bp) protein (991aa)
Serine/threonine-protein kinase transcriptional regulatory protein PknK_3 n=1 Tax=Deinococcus gobiensis (strain DSM 21396 / JCM 16679 / CGMCC 1.7299 / I-0) RepID=H8H1F5_DEIGI
LuxR family transcriptional regulator {ECO:0000313|EMBL:AIE86969.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
Serine/threonine-protein kinase transcriptional regulatory protein PknK_3
SCNpilot_expt_500_bf_scaffold_1499_curated_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(3392..4315)
DNA (924bp) protein (308aa)
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ56_9BACT
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:EEF60094.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1499_curated_3
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

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comp(4646..5284)
DNA (639bp) protein (213aa)
type 11 methyltransferase id=7200287 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
methyltransferase
Tax=RIFOXYC12_FULL_TA06_54_24_curated
SCNpilot_expt_500_bf_scaffold_1499_curated_4
unknown

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5296..6132
DNA (837bp) protein (279aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1499_curated_5
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(6134..7333)
DNA (1200bp) protein (400aa)
HipA N-terminal domain-containing protein; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1]
hypothetical protein n=1 Tax=Legionella shakespearei RepID=UPI0003733D48
Tax=RBG_16_Actinobacteria_68_21_curated
SCNpilot_expt_500_bf_scaffold_1499_curated_6
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(7320..7550)
DNA (231bp) protein (77aa)
Helix-turn-helix domain protein n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3Q430_STANL
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADD45915.1}; TaxID=446470 species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
SCNpilot_expt_500_bf_scaffold_1499_curated_7
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(7649..9292)
DNA (1644bp) protein (548aa)
hypothetical protein n=1 Tax=Promicromonospora sukumoe RepID=UPI00037B24E4
glycogen debranching enzyme
Glycogen debranching enzyme {ECO:0000313|EMBL:AEK42684.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
SCNpilot_expt_500_bf_scaffold_1499_curated_8
Burkholderia lata, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9561..10022)
DNA (462bp) protein (154aa)
membrane protein n=1 Tax=Pseudomonas pyrrocinia RepID=UPI0003188819
hypothetical protein
Integral membrane protein {ECO:0000313|EMBL:ABB05929.1}; TaxID=482957 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194; / 383).;"
SCNpilot_expt_500_bf_scaffold_1499_curated_9
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10015..10725)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Rhodococcus opacus (strain B4) RepID=C1B8Y8_RHOOB
hypothetical protein
NmrA family transcriptional regulator {ECO:0000313|EMBL:AHE97678.1}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocyanoxidans ARh 4.;"
SCNpilot_expt_500_bf_scaffold_1499_curated_10
unknown

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11159..11605
DNA (447bp) protein (149aa)

This feature has no annotations

Displaying 10 items

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