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scnpilot_expt_750_p_scaffold_2050_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_2050_curated_1
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(3..443)
DNA (441bp) protein (147aa)
Regulatory protein RecX n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J246_9PORP
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
recX; regulatory protein RecX; K03565 regulatory protein
scnpilot_expt_750_p_scaffold_2050_curated_2
Bacteroides coprophilus CAG:333, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(548..1444)
DNA (897bp) protein (299aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1263041 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environment
protoporphyrinogen oxidase; K02493 release factor glutamine methyltransferase [EC:2.1.1.-]
Release factor glutamine methyltransferase n=1 Tax=Bacteroides coprophilus CAG:333 RepID=R6S322_9BACE
scnpilot_expt_750_p_scaffold_2050_curated_3
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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1484..2545
DNA (1062bp) protein (354aa)
diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-aminO-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Riboflavin biosynthesis protein RibD n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J1Z3_9PORP
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
scnpilot_expt_750_p_scaffold_2050_curated_4
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2710..3408
DNA (699bp) protein (233aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J1Z5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK00251.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_2050_curated_5
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3422..4180
DNA (759bp) protein (253aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
UDP pyrophosphate synthetase; K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31]
Isoprenyl transferase n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X2J0_9PORP
scnpilot_expt_750_p_scaffold_2050_curated_6
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4241..6868
DNA (2628bp) protein (876aa)
Outer membrane protein assembly complex, YaeT protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X2J1_9PORP
Outer membrane protein assembly complex, YaeT protein {ECO:0000313|EMBL:EGK05681.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
outer membrane protein; K07277 outer membrane protein
scnpilot_expt_750_p_scaffold_2050_curated_7
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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6975..7490
DNA (516bp) protein (172aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X2J2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK05682.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
outer membrane protein; K06142 outer membrane protein
scnpilot_expt_750_p_scaffold_2050_curated_8
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7545..8045
DNA (501bp) protein (167aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J1Z9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK00255.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
outer membrane protein; K06142 outer membrane protein
scnpilot_expt_750_p_scaffold_2050_curated_9
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8213..9892
DNA (1680bp) protein (560aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WXG6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK04922.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
scnpilot_expt_750_p_scaffold_2050_curated_10
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9907..10536
DNA (630bp) protein (210aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WXG5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK04921.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
ABC transporter related protein
scnpilot_expt_750_p_scaffold_2050_curated_11
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10581..11696
DNA (1116bp) protein (372aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WXG4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK04920.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
Predicted permease.
scnpilot_expt_750_p_scaffold_2050_curated_12
Chryseobacterium formosense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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11917..13050
DNA (1134bp) protein (378aa)
hypothetical protein n=1 Tax=Riemerella columbina RepID=UPI0003672D02
Permease {ECO:0000313|EMBL:KFE98454.1}; TaxID=236814 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium formosense.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_2050_curated_13
unknown

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13315..13458
DNA (144bp) protein (48aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_2050_curated_14
Flavobacterium sp. EM1321, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(13425..14036)
DNA (612bp) protein (204aa)
Uncharacterized protein {ECO:0000313|EMBL:KDN54586.1}; TaxID=1492738 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1321.;"
Putative uncharacterized protein id=3342807 bin=GWF2_Bacteroidetes_42_66 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_42_66 organism_group=Bacteroidetes organism_desc=a73
hypothetical protein
scnpilot_expt_750_p_scaffold_2050_curated_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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14608..15480
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FL65_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83253.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Domain of unknown function (DUF1837).
scnpilot_expt_750_p_scaffold_2050_curated_16
BJP_IG2069_Spirochaetales_48_31, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

15480..17999
DNA (2520bp) protein (840aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:265 RepID=R6KM25_9CLOT
DEAD/DEAH box helicase domain-containing protein
Tax=BJP_IG2069_Spirochaetales_48_31
scnpilot_expt_750_p_scaffold_2050_curated_17
CG_Flavo_02, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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17996..18157
DNA (162bp) protein (54aa)
id=2180278 bin=GWE2_Bacteroidetes_40_15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good +
Tax=CG_Flavo_02
scnpilot_expt_750_p_scaffold_2050_curated_18
Acinetobacter sp. COS3, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18194..18850
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI000375DA87
Uncharacterized protein {ECO:0000313|EMBL:ERP96146.1}; TaxID=1397525 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp. COS3.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_2050_curated_19
CG_Maritim_01, Maritimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

19073..19519
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0002F808F8
GCN5-like N-acetyltransferase
Tax=CG_Maritim_01
scnpilot_expt_750_p_scaffold_2050_curated_20
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

19859..21055
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VWM2_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EFK37074.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_2050_curated_21
Bacteroides sp. 2_1_22, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21308..21772
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037970D2
Uncharacterized protein {ECO:0000313|EMBL:EEZ04503.1}; TaxID=469588 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_22.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_2050_curated_22
Draconibacterium sp. JN14CK-3, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21959..22507
DNA (549bp) protein (183aa)
transposase n=1 Tax=Marinilabilia salmonicolor RepID=UPI000299FC6E
Transposase {ECO:0000313|EMBL:KJF44231.1}; TaxID=1544798 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium sp. JN14CK-3.;"
Transposase and inactivated derivatives
scnpilot_expt_750_p_scaffold_2050_curated_23
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22798..24114)
DNA (1317bp) protein (439aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=N2AXE2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB47532.1}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
Inner membrane protein involved in colicin E2 resistance
scnpilot_expt_750_p_scaffold_2050_curated_24
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24184..24471)
DNA (288bp) protein (96aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5ZBM8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB47531.1}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
Transcriptional regulator ArsR family
scnpilot_expt_750_p_scaffold_2050_curated_25
Capnocytophaga sp. oral taxon 863, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24468..25076)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Capnocytophaga sp. oral taxon 863 str. F0517 RepID=U2C2P3_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ERI63552.1}; TaxID=1227266 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga sp. oral taxon 863 str. F0517.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_2050_curated_26
unknown

Not on your lists

25189..25305
DNA (117bp) protein (39aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_2050_curated_27
Chloroherpeton thalassium, Chloroherpeton, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

25438..25785
DNA (348bp) protein (116aa)
Fe-only nitrogenase accessory protein AnfO n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QTU4_CHLT3
Fe-only nitrogenase accessory protein AnfO
Fe-only nitrogenase accessory protein AnfO {ECO:0000313|EMBL:ACF14292.1}; TaxID=517418 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chloroherpeton.;" source="Chloroherpeton thalassium (strain ATCC 35110 / GB-78).;"
scnpilot_expt_750_p_scaffold_2050_curated_28
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26188..27039
DNA (852bp) protein (284aa)
AraC family transcriptional regulator n=1 Tax=Anaerophaga thermohalophila RepID=UPI0003196F22
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ADZ81578.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
scnpilot_expt_750_p_scaffold_2050_curated_29
Bacteroides reticulotermitis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27303..28037
DNA (735bp) protein (245aa)
Oxidoreductase, 2-nitropropane dioxygenase family n=1 Tax=Bacteroides sp. 3_1_23 RepID=D7K579_9BACE
Enoyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:GAE84190.1}; TaxID=1445607 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides reticulotermitis JCM 10512.;"
Dioxygenases related to 2-nitropropane dioxygenase
Displaying 29 items

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