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scnpilot_expt_750_p_scaffold_2338_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_2338_curated_1
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..1011
DNA (1011bp) protein (337aa)
Glycoside hydrolase family 43 n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1T8P5_9CLOT
Glycoside hydrolase family 43 {ECO:0000313|EMBL:EGD48877.1}; Flags: Precursor;; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
beta-xylosidase
scnpilot_expt_750_p_scaffold_2338_curated_2
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1022..2425
DNA (1404bp) protein (468aa)
Carbohydrate-binding family 6 protein n=1 Tax=Clostridium thermocellum BC1 RepID=U4MPP7_CLOTM
carbohydrate-binding family 6 protein
Glycoside hydrolase family 43 {ECO:0000313|EMBL:ABN53398.1}; Flags: Precursor;; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
scnpilot_expt_750_p_scaffold_2338_curated_3
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

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2432..4207
DNA (1776bp) protein (592aa)
Glycoside hydrolase family 43 n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y349_9SPHI
glycoside hydrolase family protein
Tax=RBG_13_Bacteroidetes_42_15_curated
scnpilot_expt_750_p_scaffold_2338_curated_4
Flavobacterium sp. EM1321, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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4229..5602
DNA (1374bp) protein (458aa)
Carbohydrate binding module (Family 6) n=2 Tax=Bacteroides RepID=E2NA87_9BACE
Carbohydrate-binding protein {ECO:0000313|EMBL:KDN53685.1}; TaxID=1492738 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1321.;"
glycoside hydrolase family protein
scnpilot_expt_750_p_scaffold_2338_curated_5
unknown

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5606..5755
DNA (150bp) protein (50aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_2338_curated_6
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5827..6108
DNA (282bp) protein (94aa)
glycoside hydrolase family protein; K01811 alpha-D-xyloside xylohydrolase [EC:3.2.1.177]
Glycoside hydrolase family 31 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4X2_PALPW
Glycoside hydrolase family 31 {ECO:0000313|EMBL:ADQ79766.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_expt_750_p_scaffold_2338_curated_7
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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6134..8488
DNA (2355bp) protein (785aa)
alpha-L-fucosidase (EC:3.2.1.51)
Glycoside hydrolase family 29 (Alpha-L-fucosidase) n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YBQ3_9SPHI
Glycoside hydrolase family 29 (Alpha-L-fucosidase) {ECO:0000313|EMBL:EHQ26016.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
scnpilot_expt_750_p_scaffold_2338_curated_8
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

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8529..10955
DNA (2427bp) protein (809aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00036D5246
beta-glycosidase
Tax=RBG_13_Bacteroidetes_42_15_curated
scnpilot_expt_750_p_scaffold_2338_curated_9
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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10968..12368
DNA (1401bp) protein (467aa)
Uncharacterized protein n=4 Tax=Bacteroides RepID=D4X015_9BACE
Hypothetical periplasmic glycoside hydrolase,family DUF1680 {ECO:0000313|EMBL:CDM05405.1}; TaxID=702447 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens SD CC 1b.;"
glycosyl hydrolase; K09955 hypothetical protein
Displaying 9 items

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