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scnpilot_expt_750_p_scaffold_9760_curated

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_9760_curated_1
Tannerella sp. oral taxon BU063, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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45..263
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Tannerella forsythia (strain ATCC 43037 / JCM 10827 / FDC 338) RepID=G8ULN8_TANFA
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1410950 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella.;" source="Tannerella sp. oral taxon BU063 isolate Cell 5.;"
scnpilot_expt_750_p_scaffold_9760_curated_2
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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278..394
DNA (117bp) protein (39aa)
50S ribosomal protein L36 n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J041_9PORP
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
scnpilot_expt_750_p_scaffold_9760_curated_3
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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434..814
DNA (381bp) protein (127aa)
30S ribosomal protein S13 n=3 Tax=Parabacteroides RepID=K6ACD4_9PORP
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
scnpilot_expt_750_p_scaffold_9760_curated_4
Parabacteroides sp. CAG:409, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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824..1213
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=1 Tax=Parabacteroides sp. CAG:409 RepID=R7JKL3_9PORP
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1262913 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:409.;"
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
scnpilot_expt_750_p_scaffold_9760_curated_5
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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1327..1932
DNA (606bp) protein (202aa)
30S ribosomal protein S4 n=3 Tax=Parabacteroides RepID=K6A016_9PORP
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
scnpilot_expt_750_p_scaffold_9760_curated_6
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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1945..2937
DNA (993bp) protein (331aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WVV1_9PORP
scnpilot_expt_750_p_scaffold_9760_curated_7
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2942..3337
DNA (396bp) protein (132aa)
50S ribosomal protein L17 n=2 Tax=Parabacteroides RepID=E1Z0F9_9PORP
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
Displaying 7 items

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