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SCNpilot_expt_1000_bf_scaffold_854_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_854_curated_1
unknown

Not on your lists

comp(2..154)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_854_curated_2
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(371..1099)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0P3S2_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AIM35348.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
SCNpilot_expt_1000_bf_scaffold_854_curated_3
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1167..2216
DNA (1050bp) protein (350aa)
dihydroorotate dehydrogenase 2; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU35_CHIPD
SCNpilot_expt_1000_bf_scaffold_854_curated_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

2223..3014
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003717F2B
integral membrane protein TerC
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_854_curated_5
unknown

Not on your lists

3155..3502
DNA (348bp) protein (116aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_854_curated_6
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

3653..5035
DNA (1383bp) protein (461aa)
Thermitase id=4075160 bin=GWF2_Bacteroidetes_35_48 species=Thermoplasmatales archaeon SCGC AB-540-F20 genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
SCNpilot_expt_1000_bf_scaffold_854_curated_7
unknown

Not on your lists

5130..5639
DNA (510bp) protein (170aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_854_curated_8
unknown

Not on your lists

comp(5908..7407)
DNA (1500bp) protein (500aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_854_curated_9
BJP_08E140C01_Bacteriodales_41_10, Bacteriodales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7738..11688
DNA (3951bp) protein (1317aa)
hypothetical protein, partial n=1 Tax=Segetibacter koreensis RepID=UPI00037FBD2A
carbohydrate binding family 6
Tax=BJP_08E140C01_Bacteriodales_41_10
SCNpilot_expt_1000_bf_scaffold_854_curated_10
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

11798..15730
DNA (3933bp) protein (1311aa)
Uncharacterized protein n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SHW9_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFF19043.1}; TaxID=991 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
carbohydrate binding family 6
SCNpilot_expt_1000_bf_scaffold_854_curated_11
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15808..17475
DNA (1668bp) protein (556aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
Formate--tetrahydrofolate ligase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KNN2_SOLCM
formyltetrahydrofolate synthetase
SCNpilot_expt_1000_bf_scaffold_854_curated_12
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17523..18038)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Paenibacillus elgii RepID=UPI000248CBC9
Uncharacterized protein {ECO:0000313|EMBL:KEQ27395.1}; TaxID=1501230 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MSt1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_854_curated_13
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18119..19105
DNA (987bp) protein (329aa)
Pyridoxine 4-dehydrogenase {ECO:0000313|EMBL:AEE54085.1}; EC=1.1.1.65 {ECO:0000313|EMBL:AEE54085.1};; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
Pyridoxine 4-dehydrogenase n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L667_HALH1
pyridoxine 4-dehydrogenase
SCNpilot_expt_1000_bf_scaffold_854_curated_14
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

19200..19754
DNA (555bp) protein (185aa)
Ferritin {ECO:0000256|RuleBase:RU361145}; EC=1.16.3.2 {ECO:0000256|RuleBase:RU361145};; TaxID=1086011 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium frigoris PS1.;"
Ferritin 1 n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FQT0_9FLAO
ferritin-like protein
SCNpilot_expt_1000_bf_scaffold_854_curated_15
Leptolyngbya sp. Heron Island J, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(19802..21004)
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Pseudanabaena sp. PCC 6802 RepID=UPI00036361FE
Low temperature requirement a {ECO:0000313|EMBL:ESA38973.1}; TaxID=1385935 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. Heron Island J.;"
low temperature requirement A
SCNpilot_expt_1000_bf_scaffold_854_curated_16
unknown

Not on your lists

comp(21081..21326)
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_854_curated_17
unknown

Not on your lists

comp(21338..21700)
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_854_curated_18
Phaeodactylibacter xiamenensis, Phaeodactylibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21804..22313)
DNA (510bp) protein (170aa)
Thioredoxin family protein n=1 Tax=Flavobacterium columnare (strain ATCC 49512 / CIP 103533 / TG 44/87) RepID=G8X6U6_FLACA
Uncharacterized protein {ECO:0000313|EMBL:KGE85347.1}; TaxID=1524460 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Phaeodactylibacter.;" source="Phaeodactylibacter xiamenensis.;"
thioredoxin family protein
SCNpilot_expt_1000_bf_scaffold_854_curated_19
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22428..23003
DNA (576bp) protein (192aa)
pentapeptide repeat-containing protein id=2043426 bin=GWD2_Bacteroidetes_33_33 species=Pedobacter agri genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
pentapeptide repeat-containing protein
Tax=GWD2_Bacteroidetes_33_33_curated
SCNpilot_expt_1000_bf_scaffold_854_curated_20
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(23027..23503)
DNA (477bp) protein (159aa)
Transcription activator n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JU85_9BACT
Transcription activator {ECO:0000313|EMBL:ELR71114.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
SCNpilot_expt_1000_bf_scaffold_854_curated_21
unknown

Not on your lists

23812..24666
DNA (855bp) protein (285aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_854_curated_22
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

24782..25342
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FDF7_FLAJ1
hypothetical protein
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_1000_bf_scaffold_854_curated_23
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(25376..26365)
DNA (990bp) protein (330aa)
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GS94_9BACT
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:CCH56773.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
alcohol dehydrogenase zinc-binding domain-containing protein
SCNpilot_expt_1000_bf_scaffold_854_curated_24
Flavobacterium indicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26542..27606)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XV78_FLAIG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG53048.1}; TaxID=1094466 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9).;"
Displaying 24 items

View Taxonomy