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SCNpilot_cont_1000_p_scaffold_3318_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_3318_curated_1
Flavobacterium psychrophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(1..1041)
DNA (1041bp) protein (347aa)
Pectate lyase {ECO:0000313|EMBL:AIJ36501.1}; EC=4.2.2.2 {ECO:0000313|EMBL:AIJ36501.1};; TaxID=96345 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum.;"
Uncharacterized protein n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GVK3_FLAPJ
hypothetical protein
SCNpilot_cont_1000_p_scaffold_3318_curated_2
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(1122..2132)
DNA (1011bp) protein (337aa)
Oxidoreductase domain protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EPW1_RUNSL
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:AEI50309.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_cont_1000_p_scaffold_3318_curated_3
Leptolyngbya sp. Heron Island J, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(2196..3416)
DNA (1221bp) protein (407aa)
hypothetical protein n=1 Tax=Deinococcus aquatilis RepID=UPI0003758860
Low temperature requirement a {ECO:0000313|EMBL:ESA38973.1}; TaxID=1385935 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. Heron Island J.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_3318_curated_4
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(3457..5343)
DNA (1887bp) protein (629aa)
ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
ATP-dependent DNA helicase, RecQ family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQ71_CHIPD
ATP-dependent DNA helicase, RecQ family {ECO:0000313|EMBL:ACU58760.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_3318_curated_5
unknown

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comp(5351..5824)
DNA (474bp) protein (158aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3318_curated_6
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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5933..7000
DNA (1068bp) protein (356aa)
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Branched-chain-amino-acid aminotransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU60_CHIPD
SCNpilot_cont_1000_p_scaffold_3318_curated_7
unknown

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7149..7286
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3318_curated_8
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(7290..8222)
DNA (933bp) protein (311aa)
Chaperone DnaJ domain protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YFN8_9SPHI
Chaperone DnaJ domain protein {ECO:0000313|EMBL:EHQ24440.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
SCNpilot_cont_1000_p_scaffold_3318_curated_9
unknown

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comp(8308..8748)
DNA (441bp) protein (147aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3318_curated_10
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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9182..10186
DNA (1005bp) protein (335aa)
fatty acid desaturase; K04712 sphingolipid delta-4 desaturase [EC:1.14.-.-]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000371BA48
Fatty acid desaturase {ECO:0000313|EMBL:EHQ24740.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
SCNpilot_cont_1000_p_scaffold_3318_curated_11
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

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10342..12381
DNA (2040bp) protein (680aa)
PKD domain containing protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IF85_FLUTR
PKD domain-containing protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
Displaying 11 items

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