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SCNpilot_bf_inoc_scaffold_407_curated

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Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_407_curated_1
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(461..1411)
DNA (951bp) protein (317aa)
Endonuclease/exonuclease/phosphatase id=4483994 bin=GWC2_Bacteroidetes_46_850 species=Cellulophaga lytica genus=Cellulophaga taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
endonuclease/exonuclease/phosphatase
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_407_curated_2
Bacteroides salyersiae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1594..2013)
DNA (420bp) protein (140aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};; TaxID=997887 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides salyersiae CL02T12C01.;"
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037917F2
hypothetical protein
SCNpilot_bf_inoc_scaffold_407_curated_3
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2053..3285)
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000378FBDF
hypothetical protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_407_curated_4
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3373..4077
DNA (705bp) protein (235aa)
Putative uncharacterized protein id=4484124 bin=GWC2_Bacteroidetes_46_850 species=Dysgonomonas mossii genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
hypothetical protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_407_curated_5
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4162..9732
DNA (5571bp) protein (1857aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036120A5
Uncharacterized protein {ECO:0000313|EMBL:EGK01067.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
alpha-2-macroglobulin family protein; K06894
SCNpilot_bf_inoc_scaffold_407_curated_6
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9729..12059
DNA (2331bp) protein (777aa)
penicillin-binding protein; K05367 penicillin-binding protein 1C [EC:2.4.1.-]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003766061
Penicillin-binding protein 1C {ECO:0000313|EMBL:EGK00913.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
SCNpilot_bf_inoc_scaffold_407_curated_7
unknown

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comp(12082..12249)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_407_curated_8
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(12256..14874)
DNA (2619bp) protein (873aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
valyL-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9]
Valine--tRNA ligase id=4484127 bin=GWC2_Bacteroidetes_46_850 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
SCNpilot_bf_inoc_scaffold_407_curated_9
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(15106..15954)
DNA (849bp) protein (283aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Tannerella sp. CAG:51 RepID=R7DES3_9PORP
Putative Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:CDT30547.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
endonuclease/exonuclease/phosphatase
SCNpilot_bf_inoc_scaffold_407_curated_10
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15959..17476)
DNA (1518bp) protein (506aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=N2AQW0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB59480.1}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
RagB/SusD domain-containing protein
SCNpilot_bf_inoc_scaffold_407_curated_11
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17574..19502)
DNA (1929bp) protein (643aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Parabacteroides sp. ASF519 RepID=N2AU86_9PORP
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:KKB59481.1}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
TonB-dependent receptor plug
SCNpilot_bf_inoc_scaffold_407_curated_12
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19459..19962)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037E2AAC
Outer membrane receptor proteins, mostly Fe transport
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_407_curated_13
Bacteroides reticulotermitis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20345..20746
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. 1_1_6 RepID=C6IS58_9BACE
Uncharacterized protein {ECO:0000313|EMBL:GAE85264.1}; TaxID=1445607 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides reticulotermitis JCM 10512.;"
Helix-turn-helix.
SCNpilot_bf_inoc_scaffold_407_curated_14
Bacteroides reticulotermitis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20792..21193
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. 1_1_6 RepID=C6IS58_9BACE
Uncharacterized protein {ECO:0000313|EMBL:GAE85264.1}; TaxID=1445607 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides reticulotermitis JCM 10512.;"
Helix-turn-helix.
SCNpilot_bf_inoc_scaffold_407_curated_15
Bacteroides finegoldii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21242..21640
DNA (399bp) protein (133aa)
transcriptional regulator n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000371ACB9
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEX46357.1}; TaxID=483215 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides finegoldii DSM 17565.;"
Helix-turn-helix.
SCNpilot_bf_inoc_scaffold_407_curated_16
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22017..22508)
DNA (492bp) protein (164aa)
Polymerase III epsilon subunit {ECO:0000313|EMBL:CEA14775.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CEA14775.1};; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
Exonuclease n=2 Tax=Bacteroides cellulosilyticus RepID=E2NDY3_9BACE
hypothetical protein
SCNpilot_bf_inoc_scaffold_407_curated_17
BJP_IG2102_Bacteroidetes_40_12, Bacteroidetes, Bacteria

Not on your lists

22706..24217
DNA (1512bp) protein (504aa)
Filamentation induced by cAMP protein Fic n=1 Tax=Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) RepID=E6SU16_BACT6
Fic family protein
Tax=BJP_IG2102_Bacteroidetes_40_12
SCNpilot_bf_inoc_scaffold_407_curated_18
Prevotella melaninogenica, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24841..25623
DNA (783bp) protein (261aa)
RHS repeat-associated core domain protein n=1 Tax=Prevotella melaninogenica (strain ATCC 25845 / DSM 7089 / JCM 6325 / VPI 2381 / B282) RepID=D9RWK2_PREMB
RHS repeat-associated core domain protein
RHS repeat-associated core domain protein {ECO:0000313|EMBL:ADK97037.1}; TaxID=553174 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella melaninogenica (strain ATCC 25845 / DSM 7089 / JCM 6325 /; VPI 2381 / B282) (Bacteroides melaninogenicus).;"
SCNpilot_bf_inoc_scaffold_407_curated_19
Prevotella melaninogenica, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25777..26583
DNA (807bp) protein (269aa)
RHS repeat-associated core domain protein n=1 Tax=Prevotella melaninogenica (strain ATCC 25845 / DSM 7089 / JCM 6325 / VPI 2381 / B282) RepID=D9RWK2_PREMB
RHS repeat-associated core domain protein
RHS repeat-associated core domain protein {ECO:0000313|EMBL:ADK97037.1}; TaxID=553174 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella melaninogenica (strain ATCC 25845 / DSM 7089 / JCM 6325 /; VPI 2381 / B282) (Bacteroides melaninogenicus).;"
SCNpilot_bf_inoc_scaffold_407_curated_20
Prevotella melaninogenica, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26565..27047
DNA (483bp) protein (161aa)
RHS repeat-associated core domain protein n=1 Tax=Prevotella melaninogenica (strain ATCC 25845 / DSM 7089 / JCM 6325 / VPI 2381 / B282) RepID=D9RWK2_PREMB
RHS repeat-associated core domain protein
RHS repeat-associated core domain protein {ECO:0000313|EMBL:ADK97037.1}; TaxID=553174 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella melaninogenica (strain ATCC 25845 / DSM 7089 / JCM 6325 /; VPI 2381 / B282) (Bacteroides melaninogenicus).;"
SCNpilot_bf_inoc_scaffold_407_curated_21
Prevotella sp. oral taxon 317, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27051..27443
DNA (393bp) protein (131aa)
RHS repeat-associated core domain protein n=1 Tax=Prevotella sp. oral taxon 317 str. F0108 RepID=D3IL20_9BACT
RHS repeat-associated core domain protein {ECO:0000313|EMBL:EFC68138.1}; TaxID=575615 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella sp. oral taxon 317 str. F0108.;"
RHS repeat-associated core domain protein
SCNpilot_bf_inoc_scaffold_407_curated_22
Prevotella melaninogenica, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27567..28031
DNA (465bp) protein (155aa)
RHS repeat-associated core domain protein n=1 Tax=Prevotella melaninogenica (strain ATCC 25845 / DSM 7089 / JCM 6325 / VPI 2381 / B282) RepID=D9RWK2_PREMB
RHS repeat-associated core domain protein
RHS repeat-associated core domain protein {ECO:0000313|EMBL:ADK97037.1}; TaxID=553174 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella melaninogenica (strain ATCC 25845 / DSM 7089 / JCM 6325 /; VPI 2381 / B282) (Bacteroides melaninogenicus).;"
SCNpilot_bf_inoc_scaffold_407_curated_23
unknown

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28031..28417
DNA (387bp) protein (129aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_407_curated_24
unknown

Not on your lists

28577..28924
DNA (348bp) protein (116aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_407_curated_25
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

28896..29255
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Treponema socranskii subsp. paredis ATCC 35535 RepID=S3KLT3_TRESO
Uncharacterized protein {ECO:0000313|EMBL:EPF25474.1}; TaxID=1125701 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. paredis ATCC 35535.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_407_curated_26
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

29273..29737
DNA (465bp) protein (155aa)
Uncharacterized protein {ECO:0000313|EMBL:KGO92215.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
SCNpilot_bf_inoc_scaffold_407_curated_27
Prevotella sp. oral taxon 317, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29810..30250
DNA (441bp) protein (147aa)
RHS repeat-associated core domain protein n=1 Tax=Prevotella sp. oral taxon 317 str. F0108 RepID=D3IL20_9BACT
RHS repeat-associated core domain protein {ECO:0000313|EMBL:EFC68138.1}; TaxID=575615 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella sp. oral taxon 317 str. F0108.;"
RHS repeat-associated core domain protein
SCNpilot_bf_inoc_scaffold_407_curated_28
Bacteroides sp. CAG:530, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30247..30564
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:530 RepID=R6CVQ4_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDA76909.1}; TaxID=1262741 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:530.;"
SCNpilot_bf_inoc_scaffold_407_curated_29
unknown

Not on your lists

30566..30796
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_407_curated_30
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30694..31113)
DNA (420bp) protein (140aa)
Polymerase III epsilon subunit {ECO:0000313|EMBL:CEA14775.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CEA14775.1};; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
Exonuclease n=2 Tax=Bacteroides cellulosilyticus RepID=E2NDY3_9BACE
hypothetical protein
Displaying items 1-30 of 83 in total

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