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SCNpilot_bf_inoc_scaffold_344_curated

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_344_curated_1
unknown

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comp(334..540)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_344_curated_2
Tannerella forsythia, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(872..1465)
DNA (594bp) protein (198aa)
Sigma-70 region 2 n=1 Tax=Tannerella forsythia (strain ATCC 43037 / JCM 10827 / FDC 338) RepID=G8UKH8_TANFA
Sigma-70 region 2; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Sigma-70 region 2 {ECO:0000313|EMBL:BAR47952.1}; TaxID=1307832 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella.;" source="Tannerella forsythia 3313.;"
SCNpilot_bf_inoc_scaffold_344_curated_3
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(1651..3369)
DNA (1719bp) protein (573aa)
acyl-CoA dehydrogenase; K00257 [EC:1.3.99.-]
acyl-CoA dehydrogenase n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037F589F
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_344_curated_4
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(3411..4430)
DNA (1020bp) protein (340aa)
Electron transfer flavoprotein subunit alpha id=4879455 bin=GWC2_Bacteroidetes_46_850 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
electron transfer flavoprotein alpha subunit; K03522 electron transfer flavoprotein alpha subunit
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_344_curated_5
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4485..5357)
DNA (873bp) protein (291aa)
electron transfer flavoprotein subunit beta n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003715ED6
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:CEA15931.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
Electron transfer flavoprotein, beta subunit
SCNpilot_bf_inoc_scaffold_344_curated_6
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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5631..6680
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036B1115
hypothetical protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_344_curated_7
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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6958..8931
DNA (1974bp) protein (658aa)
Transcription termination factor Rho id=4879460 bin=GWC2_Bacteroidetes_46_850 species=Dysgonomonas gadei genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
rho; transcription termination factor Rho; K03628 transcription termination factor Rho
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_344_curated_8
Myroides profundi, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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9001..9591
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000369B8F4
Uncharacterized protein {ECO:0000313|EMBL:AJH15440.1}; TaxID=480520 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides profundi.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_344_curated_9
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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9680..10696
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SCG2_PEDSD
Uncharacterized protein {ECO:0000313|EMBL:KHJ37542.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_344_curated_10
Tannerella forsythia, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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10714..11628
DNA (915bp) protein (305aa)
Glutaminase {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476}; EC=3.5.1.2 {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476};; TaxID=1307833 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella.;" source="Tannerella forsythia KS16.;"
glsA; glutaminase A; K01425 glutaminase [EC:3.5.1.2]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036205E2
SCNpilot_bf_inoc_scaffold_344_curated_11
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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11917..12807
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036E1943
hypothetical protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_344_curated_12
unknown

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13008..13574
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003660054
SCNpilot_bf_inoc_scaffold_344_curated_13
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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13686..15092
DNA (1407bp) protein (469aa)
d-glucuronate isomerase (EC:5.3.1.12); K01812 glucuronate isomerase [EC:5.3.1.12]
glucuronate isomerase n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003804B83
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_344_curated_14
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15116..16363
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003825A37
hypothetical protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_344_curated_15
Bacteroides coprosuis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16426..16683
DNA (258bp) protein (86aa)
carbohydrate kinase, PfkB family; K00874 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
2-dehydro-3-deoxygluconokinase n=1 Tax=Bacteroides propionicifaciens RepID=UPI00036F1C5B
PfkB domain protein {ECO:0000313|EMBL:EGJ72155.1}; TaxID=679937 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprosuis DSM 18011.;"
SCNpilot_bf_inoc_scaffold_344_curated_16
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16680..18140
DNA (1461bp) protein (487aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J328_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGJ99872.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
hexuronate transporter; K08191 MFS transporter, ACS family, hexuronate transporter rbh
SCNpilot_bf_inoc_scaffold_344_curated_17
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(18217..19596)
DNA (1380bp) protein (460aa)
transport protein id=4428166 bin=GWA2_Bacteroidetes_42_15 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
transport protein
Tax=GWE2_Bacteroidetes_42_39_curated
SCNpilot_bf_inoc_scaffold_344_curated_18
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(19601..20119)
DNA (519bp) protein (173aa)
Putative uncharacterized protein id=3935131 bin=GWC2_Bacteroidetes_46_850 species=unknown genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
acetyltransferase
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_344_curated_19
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20216..22006)
DNA (1791bp) protein (597aa)
aminopeptidase; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003752540
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_344_curated_20
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22088..22441
DNA (354bp) protein (118aa)
Dihydroneopterin aldolase {ECO:0000313|EMBL:CEA14849.1}; EC=4.1.2.25 {ECO:0000313|EMBL:CEA14849.1};; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
folB; dihydroneopterin aldolase; K01633 dihydroneopterin aldolase [EC:4.1.2.25]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036C5A64
SCNpilot_bf_inoc_scaffold_344_curated_21
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22591..23376
DNA (786bp) protein (262aa)
ABC transporter ATP-binding protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter ATP-binding protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036C10D6
ABC transporter subunit {ECO:0000313|EMBL:CEA14851.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
SCNpilot_bf_inoc_scaffold_344_curated_22
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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23373..23789
DNA (417bp) protein (139aa)
Putative Holliday junction resolvase id=3935141 bin=GWC2_Bacteroidetes_46_850 species=Bacteroides coprocola genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
conserved hypothetical protein TIGR00250
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_344_curated_23
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23799..24356
DNA (558bp) protein (186aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000368B31D
SCNpilot_bf_inoc_scaffold_344_curated_24
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24560..24763)
DNA (204bp) protein (68aa)
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_344_curated_25
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24850..25575)
DNA (726bp) protein (242aa)
6-phosphogluconolactonase {ECO:0000313|EMBL:CEA14858.1}; EC=3.1.1.31 {ECO:0000313|EMBL:CEA14858.1};; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
6-phosphogluconolactonase; K01057 6-phosphogluconolactonase [EC:3.1.1.31]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00035F1D95
SCNpilot_bf_inoc_scaffold_344_curated_26
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25608..27137)
DNA (1530bp) protein (510aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
glucose-6-phosphate 1-dehydrogenase; K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49]
glucose 6-phosphate dehydrogenase n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000370800B
SCNpilot_bf_inoc_scaffold_344_curated_27
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27234..27914)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003787689
transcriptional regulator, crp/fnr family
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_344_curated_28
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28062..28667
DNA (606bp) protein (202aa)
Cytochrome c nitrate reductase, small subunit id=2555561 bin=GWC2_Bacteroidetes_46_850 species=unknown genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
quinol oxidase; K15876 cytochrome c-type protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_344_curated_29
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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28685..30181
DNA (1497bp) protein (499aa)
nrfA; cytochrome c552 (EC:1.7.2.2); K03385 cytochrome c-552 [EC:1.7.2.2]
Cytochrome c-552 id=2555558 bin=GWC2_Bacteroidetes_46_850 species=unknown genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_344_curated_30
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30198..31457
DNA (1260bp) protein (420aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037CF8DD
Uncharacterized protein {ECO:0000313|EMBL:CEA16612.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
respiratory nitrite reductase specific cytochrome c biogenesis protein NrfK/respiratory nitrite reductase specific cytochrome c biogenesis protein NrfL
Displaying items 1-30 of 52 in total

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