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SCNpilot_expt_1000_bf_scaffold_756_curated

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_756_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..251
DNA (249bp) protein (83aa)
aapP; general L-amino acid transport ATP-binding protein; K09972 general L-amino acid transport system ATP-binding protein [EC:3.6.3.-]
General L-amino acid transport ATP-binding protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EU99_BRASB
General L-amino acid transport ATP-binding protein {ECO:0000313|EMBL:KFC69074.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_756_curated_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(313..627)
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q138W8_RHOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACF00810.1}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_expt_1000_bf_scaffold_756_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(886..1905)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9U0_STAND
Uncharacterized protein {ECO:0000313|EMBL:KFC70460.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_756_curated_4
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2346..2984)
DNA (639bp) protein (213aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8P4S0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37562.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
transglutaminase-like cysteine peptidase, BTLCP
SCNpilot_expt_1000_bf_scaffold_756_curated_5
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3803..4717)
DNA (915bp) protein (305aa)
Zinc efflux system n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F3N1_9RHIZ
Zinc efflux system {ECO:0000313|EMBL:CCV11937.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
czcD; cobalt-zinc-cadmium resistance protein CzcD; K03295 cation efflux system protein, CDF family
SCNpilot_expt_1000_bf_scaffold_756_curated_6
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5375..5893)
DNA (519bp) protein (173aa)
lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36]
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Lipoprotein signal peptidase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11N20_MESSB
SCNpilot_expt_1000_bf_scaffold_756_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5893..6519)
DNA (627bp) protein (209aa)
S-isoprenylcysteine methyltransferase-like protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UF30_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KFC75517.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
conserved membrane protein of unknown function
SCNpilot_expt_1000_bf_scaffold_756_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6522..9290)
DNA (2769bp) protein (923aa)
P type cation (Metal) transporter, ATPase component n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8A827_RHIRD
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:KFC75516.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Copper/silver-translocating P-type ATPase,heavy metal-translocating P-type ATPase, Cd/Co/Hg/Pb/Zn-transporting
SCNpilot_expt_1000_bf_scaffold_756_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9518..10855
DNA (1338bp) protein (446aa)
Divalent metal cation transporter MntH n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VXE6_9RHIZ
Divalent metal cation transporter MntH {ECO:0000256|HAMAP-Rule:MF_00221}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
manganese transport protein MntH; K03322 manganese transport protein
SCNpilot_expt_1000_bf_scaffold_756_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11489..12109
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI0003699827
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:KFC70461.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
electron transport protein SCO1/SenC; K07152
SCNpilot_expt_1000_bf_scaffold_756_curated_11
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13258..13815
DNA (558bp) protein (186aa)
Redoxin domain protein n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5ASH1_METEA
Redoxin domain-containing protein
Redoxin domain protein {ECO:0000313|EMBL:ACS40412.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
SCNpilot_expt_1000_bf_scaffold_756_curated_12
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13815..14543
DNA (729bp) protein (243aa)
Cytochrome c-type biogenesis protein CcdA (DsbD-like protein) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDN8_PELHB
Cytochrome C biogenesis protein {ECO:0000313|EMBL:KKB84663.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
cytochrome c-type biogenesis protein CcdA (DsbD-like protein); K06196 cytochrome c-type biogenesis protein
SCNpilot_expt_1000_bf_scaffold_756_curated_13
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14558..15001
DNA (444bp) protein (148aa)
disulfide bond formation protein n=1 Tax=Martelella mediterranea RepID=UPI00037C6F53
Disulfide bond formation protein DsbB {ECO:0000313|EMBL:EKF40240.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
disulfide bond formation protein
SCNpilot_expt_1000_bf_scaffold_756_curated_14
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14998..15648
DNA (651bp) protein (217aa)
DSBA oxidoreductase n=1 Tax=Nitratireductor indicus C115 RepID=K2NQW7_9RHIZ
DSBA oxidoreductase {ECO:0000313|EMBL:EKF40239.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
DSBA oxidoreductase
SCNpilot_expt_1000_bf_scaffold_756_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15934..16902
DNA (969bp) protein (323aa)
Putative transcriptional regulator n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8INN4_AZOC5
Transcriptional regulator {ECO:0000313|EMBL:KFC70454.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
lysR; transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_756_curated_16
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16925..17995)
DNA (1071bp) protein (357aa)
opine dehydrogenase (EC:1.5.1.28); K04940 opine dehydrogenase [EC:1.5.1.28]
UPI0003CDE533 related cluster n=1 Tax=unknown RepID=UPI0003CDE533
NAD/NADP octopine/nopaline dehydrogenase {ECO:0000313|EMBL:KJC39142.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_expt_1000_bf_scaffold_756_curated_17
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18085..18675)
DNA (591bp) protein (197aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
Putative peroxidase-related enzyme n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QLE6_9BRAD
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_756_curated_18
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18672..19139)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2WLA6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEA08314.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_756_curated_19
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19441..20901
DNA (1461bp) protein (487aa)
FAD-dependent oxidoreductase n=1 Tax=Rhizobium leguminosarum RepID=UPI000381FAF8
oxidoreductase/monooxygenase
Putative oxidoreductase/monooxygenase {ECO:0000313|EMBL:CAK06538.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_756_curated_20
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20987..21727
DNA (741bp) protein (247aa)
amino acid ABC transporter; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
Arginine ABC transporter ATP-binding protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FEE9_9RHIZ
Arginine ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESX66246.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
SCNpilot_expt_1000_bf_scaffold_756_curated_21
Mesorhizobium sp. LSHC414A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21745..22581
DNA (837bp) protein (279aa)
UPI0003CEE93D related cluster n=1 Tax=unknown RepID=UPI0003CEE93D
Amino acid ABC transporter {ECO:0000313|EMBL:ESX77927.1}; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC414A00.;"
amino acid ABC transporter; K02030 polar amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_756_curated_22
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22661..23353
DNA (693bp) protein (231aa)
UPI0003CF5CF9 related cluster n=1 Tax=unknown RepID=UPI0003CF5CF9
Amino acid ABC transporter {ECO:0000313|EMBL:ESY64114.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_756_curated_23
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23371..24063
DNA (693bp) protein (231aa)
Putative transmembrane component of ABC transporter n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MKG3_RHIL3
transmembrane component of ABC transporter; K02029 polar amino acid transport system permease protein
Putative transmembrane component of ABC transporter {ECO:0000313|EMBL:CAK06542.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_756_curated_24
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24916..25785
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000378197F
Iron transporter {ECO:0000313|EMBL:ESY74895.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
natural resistance-associated macrophage protein
SCNpilot_expt_1000_bf_scaffold_756_curated_25
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26194..26427)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F6K3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV11901.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
SCNpilot_expt_1000_bf_scaffold_756_curated_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27138..27536
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IP68_XANP2
Uncharacterized protein {ECO:0000313|EMBL:KFC64596.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_756_curated_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27533..28948
DNA (1416bp) protein (472aa)
Secretion protein HlyD n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SMW4_NITWN
Secretion protein HlyD {ECO:0000313|EMBL:KFC64595.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
secretion protein HlyD; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB
SCNpilot_expt_1000_bf_scaffold_756_curated_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28945..32124
DNA (3180bp) protein (1060aa)
Cation efflux system protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EVX1_9RHIZ
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:KFC64594.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
CzcA family heavy metal efflux protein; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA
SCNpilot_expt_1000_bf_scaffold_756_curated_29
unknown

Not on your lists

32140..32253
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_756_curated_30
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32284..32775
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IP65_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS69811.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Displaying items 1-30 of 34 in total

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