name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_189_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2..2134)
|
nrd; ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.-); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZR3_9RHIZ
Vitamin B12-dependent ribonucleotide reductase {ECO:0000313|EMBL:KFC70336.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2900..3310
|
NADH dehydrogenase; K00356 NADH dehydrogenase [EC:1.6.99.3]
NADH-ubiquinone oxidoreductase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000316460B
NADH:ubiquinone oxidoreductase 17.2 kD subunit {ECO:0000313|EMBL:KFC70335.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3483..4103
|
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI0003818B33
Uncharacterized protein {ECO:0000313|EMBL:KFC70332.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4381..5346
|
Peptide chain release factor 2 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZT0_9RHIZ
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K02836 peptide chain release factor 2
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5416..6858)
|
Putative metalloendopeptidase {ECO:0000313|EMBL:KFC68931.1}; EC=3.4.24.- {ECO:0000313|EMBL:KFC68931.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Metalloendopeptidase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z8I0_9BRAD
metalloendopeptidase
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_6
Bartonella schoenbuchensis, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6821..7285)
|
alkyl hydroperoxide reductase; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000368B5DA
Bacterioferritin comigratory protein {ECO:0000313|EMBL:ENN91769.1}; TaxID=1094496 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.;" source="Bartonella schoenbuchensis m07a.;"
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7613..11065
|
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZT3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC68929.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11096..12349)
|
Tyrosine-tRNA ligase TyrS {ECO:0000313|EMBL:AEI06737.1}; EC=6.1.1.1 {ECO:0000313|EMBL:AEI06737.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Tyrosine--tRNA ligase n=2 Tax=Oligotropha carboxidovorans RepID=B6JHE4_OLICO
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12485..13156)
|
alpha/beta hydrolase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FFAF32
Putative hydrolase of the alpha/beta superfamily protein {ECO:0000313|EMBL:KFC68927.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K07018
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13451..14653
|
class V aminotransferase; K04487 cysteine desulfurase [EC:2.8.1.7]
Cysteine desulfurase family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZT7_9RHIZ
Cysteine desulfurase {ECO:0000313|EMBL:KFC68926.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14714..16186
|
FeS assembly protein SufB n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZT8_9RHIZ
Cysteine desulfurase activator complex subunit SufB {ECO:0000313|EMBL:KFC68925.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
sufB; ABC transporter permease; K09014 Fe-S cluster assembly protein SufB
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16299..17051
|
transporter n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003705216
FeS assembly ATPase SufC {ECO:0000313|EMBL:KFC68924.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FeS assembly ATPase SufC; K09013 Fe-S cluster assembly ATP-binding protein
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17051..18400
|
FeS assembly protein SufD n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IBN7_BEII9
FeS assembly protein SufD {ECO:0000313|EMBL:KFC68923.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FeS assembly protein SufD; K09015 Fe-S cluster assembly protein SufD
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18400..18609
|
Tautomerase {ECO:0000256|RuleBase:RU362032}; EC=5.3.2.- {ECO:0000256|RuleBase:RU362032};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
4-oxalocrotonate tautomerase family enzyme n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KDC3_PSEF5
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18614..19852
|
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SufS subfamily cysteine desulfurase; K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
Cysteine desulfurase n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZFV0_METPB
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19868..20251
|
FeS assembly SUF system protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZU2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC68920.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FeS assembly SUF system protein
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_17
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20361..21155)
|
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Acidovorax sp. CF316 RepID=J1ECW3_9BURK
Bradyrhizobium elkanii strain UASWS1015 Contig182, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46241.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21309..21821
|
Free methionine-R-sulfoxide reductase {ECO:0000313|EMBL:KFC75359.1}; EC=1.8.4.14 {ECO:0000313|EMBL:KFC75359.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
GAF domain-containing protein n=1 Tax=Rhizobium sp. CF142 RepID=J1T125_9RHIZ
hypothetical protein; K07170 GAF domain-containing protein
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_19
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21832..22182
|
UPI0003D010C1 related cluster n=1 Tax=unknown RepID=UPI0003D010C1
putative transcriptional regulator, ModE family; K02019 molybdate transport system regulatory protein
ModE family transcriptional regulator {ECO:0000313|EMBL:ESZ23477.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22292..22570
|
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBL9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KFC61597.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
transglycosylase-associated protein
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22668..23693
|
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8]
Lipoyl synthase n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=LIPA_METPB
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23706..24179
|
Cyclase/dehydrase n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y0N5_9RHIZ
Cyclase/dehydrase {ECO:0000313|EMBL:KFC61599.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cyclase/dehydrase
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24184..24681)
|
CinA domain protein n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QHC3_BRESC
CinA protein {ECO:0000313|EMBL:KFC61600.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
damage inducible protein CinA; K03743
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24684..25886)
|
4-diphosphocytidyl-2C-methyl-D-erythritol synthase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
Bifunctional enzyme IspD/IspF n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=ISPDF_AZOC5
rbh
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26065..27054
|
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
tRNA-dihydrouridine synthase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0L9_9RHIZ
NifR3 family TIM-barrel protein
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
27075..28208
|
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
nitrogen-specific signal transduction histidine kinase NtrB; K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000308BCB3
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
28224..29675
|
Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IDE2_METNO
Nitrogen assimilation regulatory protein {ECO:0000313|EMBL:KFC61604.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Fis family nitrogen metabolism transcriptional regulator NtrC; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
29828..32104
|
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
multi-sensor signal transduction histidine kinase; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
Multi-sensor signal transduction histidine kinase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UIY1_METS4
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
32101..33468
|
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IDE6_METNO
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:KFC61606.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Fis family two component sigma54 specific transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX
|
|
SCNpilot_expt_1000_bf_scaffold_189_curated_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
33678..33926
|
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000361F810
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
RNA chaperone Hfq; K03666 host factor-I protein
|