ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4372_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4372_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1..519
DNA (519bp) protein (173aa)
Protein RecA n=5 Tax=Methylobacterium extorquens RepID=A9W5Y7_METEP
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
recA; DNA strand exchange and recombination protein with protease and nuclease activity; K03553 recombination protein RecA
SCNpilot_expt_1000_bf_scaffold_4372_curated_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


707..3349
DNA (2643bp) protein (881aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
alanyl-tRNA synthetase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FD9F16
SCNpilot_expt_1000_bf_scaffold_4372_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3349..4008
DNA (660bp) protein (220aa)
Mg-chelatase subunit ChlD n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8Z445_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KFC67139.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Von Willebrand factor type A domain-containing protein; K07114 uncharacterized protein
SCNpilot_expt_1000_bf_scaffold_4372_curated_4
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4089..4736
DNA (648bp) protein (216aa)
UbiE/COQ5 family protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UGM9_RHIRD
Methyltransferase {ECO:0000313|EMBL:KFC72272.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
methyltransferase
SCNpilot_expt_1000_bf_scaffold_4372_curated_5
unknown

Not on your lists

comp(4884..5132)
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4372_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5382..6596)
DNA (1215bp) protein (405aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
isocitrate dehydrogenase; K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Isocitrate dehydrogenase [NADP] n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U9G5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4372_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6810..7625
DNA (816bp) protein (272aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC67137.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_4372_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7706..8443
DNA (738bp) protein (246aa)
kduD-2; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase 2 (EC:1.1.1.127)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Marinobacter algicola DG893 RepID=A6F0Q5_9ALTE
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:KFC67136.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_4372_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8528..9073
DNA (546bp) protein (182aa)
cupin n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FE0B50
Uncharacterized protein {ECO:0000313|EMBL:KFC67135.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cupin 2 barrel domain-containing protein
SCNpilot_expt_1000_bf_scaffold_4372_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9096..9503)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y8C5_9RHIZ
Putative flagellar assembly protein {ECO:0000313|EMBL:KFC67134.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4372_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9785..10918
DNA (1134bp) protein (378aa)
Flagellar P-ring protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IEJ9_METNO
Flagellar P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Basal body P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Flags: Precursor;; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
flgI; flagellar basal body P-ring protein; K02394 flagellar P-ring protein precursor FlgI
SCNpilot_expt_1000_bf_scaffold_4372_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10918..11259
DNA (342bp) protein (114aa)
flagellar protein FlgJ n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003449751
Uncharacterized protein {ECO:0000313|EMBL:KFC67132.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4372_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11262..11750
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI000360C42C
Uncharacterized protein {ECO:0000313|EMBL:KFC67131.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4372_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12000..12452
DNA (453bp) protein (151aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC67130.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_4372_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12747..12998
DNA (252bp) protein (84aa)
Bacterial flagellin n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LC18_9RHIZ
General L-amino acid transport system permease {ECO:0000313|EMBL:KFC67128.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
Displaying 15 items

View Taxonomy