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SCNpilot_expt_1000_bf_scaffold_541_curated

Search features with annotation key words

Displaying items 1-30 of 275 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_541_curated_1
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..166
DNA (165bp) protein (55aa)
RNA polymerase sigma factor RpoD n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYB5_9BRAD
rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCNpilot_expt_1000_bf_scaffold_541_curated_2
unknown

Not on your lists

394..942
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035F2447
SCNpilot_expt_1000_bf_scaffold_541_curated_3
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1038..1649
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000372FE55
Lysine transporter LysE {ECO:0000313|EMBL:KGM32374.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
lysine exporter protein LysE/YggA
SCNpilot_expt_1000_bf_scaffold_541_curated_4
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1657..2079
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HPM6_9RHIZ
Secondary thiamine-phosphate synthase enzyme {ECO:0000313|EMBL:EJL57356.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_541_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2083..2334)
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003612B97
Uncharacterized protein {ECO:0000313|EMBL:KFC73918.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_541_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2568..2855
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WZK1_OCHA4
Uncharacterized protein {ECO:0000313|EMBL:KFC73914.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_541_curated_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2938..3498
DNA (561bp) protein (187aa)
Pfpi family intracellular protease; K05520 protease I [EC:3.2.-.-]
Intracellular protease, PfpI family n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QJE7_RHOPT
Intracellular protease, PfpI family {ECO:0000313|EMBL:ACF00029.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_expt_1000_bf_scaffold_541_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3670..4923
DNA (1254bp) protein (418aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D3647B
Putative oxalate/formate antiporter {ECO:0000313|EMBL:KFC73910.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_541_curated_9
unknown

Not on your lists

comp(4905..5027)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_541_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5069..5488
DNA (420bp) protein (140aa)
Acyl-CoA thioester hydrolase {ECO:0000313|EMBL:KFC73908.1}; EC=3.1.2.- {ECO:0000313|EMBL:KFC73908.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
thioesterase superfamily protein; K10806 acyl-CoA thioesterase YciA [EC:3.1.2.-]
Thioesterase superfamily protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZB72_METPB
SCNpilot_expt_1000_bf_scaffold_541_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5759..8167
DNA (2409bp) protein (803aa)
Methyl-accepting chemotaxis protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBP5_PELHB
Putative methyl-accepting chemotaxis protein MCP {ECO:0000313|EMBL:KFC73906.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_541_curated_12
unknown

Not on your lists

comp(8447..9571)
DNA (1125bp) protein (375aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_541_curated_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9716..12868)
DNA (3153bp) protein (1051aa)
Resistance nodulation cell division (RND) drug efflux pump, inner membrane component n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LNA6_RHITR
resistance nodulation cell division (RND) drug efflux pump, inner membrane component
Resistance nodulation cell division (RND) drug efflux pump, inner membrane component {ECO:0000313|EMBL:AGB72873.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_541_curated_14
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12865..16029)
DNA (3165bp) protein (1055aa)
acriflavine resistance protein B n=1 Tax=Methylocystis rosea RepID=UPI00037E135E
acriflavin resistance protein
Acriflavin resistance protein {ECO:0000313|EMBL:CCJ08298.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_541_curated_15
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16043..17500)
DNA (1458bp) protein (486aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003715FA5
Multidrug resistance protein mdtA (Multidrug transporter mdtA) {ECO:0000313|EMBL:CCE03897.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
mdtA; multidrug ABC transporter; K07799 putative multidrug efflux transporter MdtA
SCNpilot_expt_1000_bf_scaffold_541_curated_16
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17497..18981)
DNA (1485bp) protein (495aa)
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Rhodovulum sp. PH10 RepID=J6UH55_9RHOB
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:EJW13276.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
RND efflux system outer membrane lipoprotein NodT
SCNpilot_expt_1000_bf_scaffold_541_curated_17
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19325..20233
DNA (909bp) protein (303aa)
Putative cbpA-like protein n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5B5I3_METEA
putative cbpA-like protein
Putative cbpA-like protein {ECO:0000313|EMBL:ACS43715.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
SCNpilot_expt_1000_bf_scaffold_541_curated_18
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20230..20511
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5B5I2_METEA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS43714.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
SCNpilot_expt_1000_bf_scaffold_541_curated_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20565..20792
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PE99_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39876.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_541_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20922..21176
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP41_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:EYR84578.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_541_curated_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21239..21433
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP42_AGRRK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM29322.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_541_curated_22
unknown

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21487..21591
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_541_curated_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21588..22868
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEA4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39881.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
NADH dehydrogenase, FAD-containing subunit
SCNpilot_expt_1000_bf_scaffold_541_curated_24
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22988..24289)
DNA (1302bp) protein (434aa)
Uncharacterized protein DUF214 n=1 Tax=Rhodovulum sp. PH10 RepID=J6UD67_9RHOB
Uncharacterized protein DUF214 {ECO:0000313|EMBL:EJW11376.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein; K02004 putative ABC transport system permease protein
SCNpilot_expt_1000_bf_scaffold_541_curated_25
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24289..24999)
DNA (711bp) protein (237aa)
ABC transporter ATP-binding protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HWA8_RUBGI
ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAL97295.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
SCNpilot_expt_1000_bf_scaffold_541_curated_26
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24977..25441)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HWA7_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL97294.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
SCNpilot_expt_1000_bf_scaffold_541_curated_27
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25510..27258)
DNA (1749bp) protein (583aa)
alkaline phosphatase (EC:3.1.3.1); K01077 alkaline phosphatase [EC:3.1.3.1]
Alkaline phosphatase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PKS8_9RHOB
Alkaline phosphatase {ECO:0000313|EMBL:EJW11372.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
SCNpilot_expt_1000_bf_scaffold_541_curated_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27539..28759
DNA (1221bp) protein (407aa)
Major facilitator superfamily MFS_1 n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UA27_METS4
Fosmidomycin resistance protein {ECO:0000313|EMBL:KFC71579.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
major facilitator transporter; K08223 MFS transporter, FSR family, fosmidomycin resistance protein
SCNpilot_expt_1000_bf_scaffold_541_curated_29
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28838..29584)
DNA (747bp) protein (249aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
superoxide dismutase; K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
Superoxide dismutase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RL70_9PROT
SCNpilot_expt_1000_bf_scaffold_541_curated_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29827..31329
DNA (1503bp) protein (501aa)
Putative chemotaxis protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D5W0_9RHIZ
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:KFC73873.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
methyl-accepting chemotaxis sensory transducer
Displaying items 1-30 of 275 in total

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