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SCNpilot_expt_1000_bf_scaffold_1203_curated

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Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1203_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..2402
DNA (2400bp) protein (800aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3] rbh
aconitate hydratase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FC3B00
SCNpilot_expt_1000_bf_scaffold_1203_curated_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2610..2891
DNA (282bp) protein (94aa)
acyl carrier protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000319A512
Acyl carrier protein {ECO:0000313|EMBL:KFC62926.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phosphopantetheine-binding protein
SCNpilot_expt_1000_bf_scaffold_1203_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3018..3482
DNA (465bp) protein (155aa)
Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabA/FabZ {ECO:0000313|EMBL:KFC62925.1}; EC=4.2.1.- {ECO:0000313|EMBL:KFC62925.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; K02372 3R-hydroxymyristoyl ACP dehydrase [EC:4.2.1.-]
3-hydroxymyristoyl/3-hydroxydecanoyl-(Acyl carrier protein) dehydratase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZI5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1203_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3479..4627
DNA (1149bp) protein (383aa)
3-oxoacyl-(acyl carrier protein) synthase II; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
Beta-ketoacyl synthase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IS44_METNO
Beta-ketoacyl synthase {ECO:0000313|EMBL:KFC62924.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_1203_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4640..5920
DNA (1281bp) protein (427aa)
3-oxoacyl-(acyl carrier protein) synthase II; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
3-oxoacyl-(Acyl-carrier-protein) synthase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZI7_9RHIZ
Beta-ketoacyl synthase {ECO:0000313|EMBL:KFC62923.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_1203_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5917..6663
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZI8_9RHIZ
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:KFC62922.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_1203_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6692..7714
DNA (1023bp) protein (341aa)
Zn-dependent oxidoreductase, NADPH:quinone reductase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZI9_9RHIZ
Alcohol dehydrogenase, zinc-binding {ECO:0000313|EMBL:KFC62921.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
alcohol dehydrogenase zinc-binding domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1203_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7823..8803
DNA (981bp) protein (327aa)
lipid A biosynthesis lauroyl acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037C74CC
Lipid A biosynthesis acyltransferase {ECO:0000313|EMBL:KFC62920.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_1203_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8870..9634
DNA (765bp) protein (255aa)
Uncharacterized secreted protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZJ1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC62919.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1203_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9669..11111)
DNA (1443bp) protein (481aa)
Uncharacterized protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZKF2_METPB
Uncharacterized protein {ECO:0000313|EMBL:KFC62918.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K06872 uncharacterized protein
SCNpilot_expt_1000_bf_scaffold_1203_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11116..11718)
DNA (603bp) protein (201aa)
LemA family lipoprotein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003783E45
LemA family protein {ECO:0000313|EMBL:KFC62916.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
LemA family protein; K03744 LemA protein
SCNpilot_expt_1000_bf_scaffold_1203_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11846..13582
DNA (1737bp) protein (579aa)
Gamma-glutamyltransferase {ECO:0000313|EMBL:KFC62915.1}; EC=2.3.2.2 {ECO:0000313|EMBL:KFC62915.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Gamma-glutamyltranspeptidase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YU17_9RHIZ
ggt; gamma-glutamyltranspeptidase
SCNpilot_expt_1000_bf_scaffold_1203_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13586..14068)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMX0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC62914.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_1203_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14075..15304)
DNA (1230bp) protein (410aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1
radical SAM protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003629DC2
SCNpilot_expt_1000_bf_scaffold_1203_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15431..16039)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FBCC0E
Uncharacterized protein {ECO:0000313|EMBL:KFC62912.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1203_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16230..17204
DNA (975bp) protein (325aa)
alcohol dehydrogenase zinc-binding domain-containing protein; K00344 NADPH2:quinone reductase [EC:1.6.5.5]
NADPH:quinone oxidoreductase n=1 Tax=Methylobacterium sp. 77 RepID=UPI0003820A81
NADPH2:quinone reductase {ECO:0000313|EMBL:KFC62911.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_1203_curated_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17208..17582)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMW2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC62910.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1203_curated_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17763..18548
DNA (786bp) protein (262aa)
3-hydroxy-2-methylbutyryl-CoA dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002ED3F6A
Phosphoribosyl-AMP cyclohydrolase {ECO:0000313|EMBL:KFC62909.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_1203_curated_19
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18552..19262)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RUD3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD85560.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1203_curated_20
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19259..19672)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NZD4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF43284.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1203_curated_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19741..20385)
DNA (645bp) protein (215aa)
Probable intracellular septation protein A n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U8N1_METS4
Probable intracellular septation protein A {ECO:0000256|HAMAP-Rule:MF_00189, ECO:0000256|SAAS:SAAS00082307}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
intracellular septation protein A; K06190 intracellular septation protein
SCNpilot_expt_1000_bf_scaffold_1203_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20382..21650)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F11F8C
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
signal recognition particle-docking protein FtsY; K03110 fused signal recognition particle receptor
SCNpilot_expt_1000_bf_scaffold_1203_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21721..22467
DNA (747bp) protein (249aa)
Pseudouridine synthase {ECO:0000313|EMBL:KFC68135.1}; EC=5.4.99.- {ECO:0000313|EMBL:KFC68135.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
pseudouridine synthase; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
Pseudouridine synthase n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZDT3_METPB
SCNpilot_expt_1000_bf_scaffold_1203_curated_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22474..22770)
DNA (297bp) protein (99aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phhB; pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96); K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=PHS_BRASO
SCNpilot_expt_1000_bf_scaffold_1203_curated_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22767..23342)
DNA (576bp) protein (192aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003641ECE
SCNpilot_expt_1000_bf_scaffold_1203_curated_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23467..24522)
DNA (1056bp) protein (352aa)
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMU4_9RHIZ
Putative oxidoreductase, NADP(H)-dependent aldo-keto reductase {ECO:0000313|EMBL:KFC68130.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
aldo/keto reductase
SCNpilot_expt_1000_bf_scaffold_1203_curated_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24603..25343)
DNA (741bp) protein (247aa)
acyl-CoA thioesterase (tesA-like) (EC:3.1.1.2)
Lysophospholipase L1-like esterase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMU5_9RHIZ
Putative esterase {ECO:0000313|EMBL:KFC68129.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_1203_curated_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25350..26051
DNA (702bp) protein (234aa)
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMU6_9RHIZ
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFC68128.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter-like protein; K02003 putative ABC transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1203_curated_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26054..28642
DNA (2589bp) protein (863aa)
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMU7_9RHIZ
Putative inner membrane protein {ECO:0000313|EMBL:KFC68127.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K02004 putative ABC transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1203_curated_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28862..29635
DNA (774bp) protein (258aa)
membrane protein n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034B4810
Uncharacterized protein {ECO:0000313|EMBL:KFC68125.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K06890
Displaying items 1-30 of 40 in total

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