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SCNpilot_cont_300_bf_scaffold_4288_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_4288_curated_1
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..434
DNA (432bp) protein (144aa)
NAD-glutamate dehydrogenase; K15371 glutamate dehydrogenase [EC:1.4.1.2]
Bacterial NAD-glutamate dehydrogenase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QR31_BREDI
Bacterial NAD-glutamate dehydrogenase {ECO:0000313|EMBL:EKY30454.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
SCNpilot_cont_300_bf_scaffold_4288_curated_2
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

664..1131
DNA (468bp) protein (156aa)
Universal stress family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZU2_BREDI
Universal stress family protein {ECO:0000313|EMBL:EGF96029.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
UspA domain-containing protein
SCNpilot_cont_300_bf_scaffold_4288_curated_3
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1256..1813
DNA (558bp) protein (186aa)
Scaffold protein Nfu/NifU family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZU1_BREDI
Scaffold protein Nfu/NifU family protein {ECO:0000313|EMBL:EGF96028.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
Scaffold protein Nfu/NifU
SCNpilot_cont_300_bf_scaffold_4288_curated_4
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1875..2459
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QJQ7_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY27915.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
SCNpilot_cont_300_bf_scaffold_4288_curated_5
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2520..2888
DNA (369bp) protein (123aa)
Helix-turn-helix family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZU0_BREDI
Helix-turn-helix family protein {ECO:0000313|EMBL:EGF96027.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_4288_curated_6
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2968..4008
DNA (1041bp) protein (347aa)
peptidase M22 glycoprotease; K14742 hypothetical protease [EC:3.4.-.-]
Universal bacterial protein YeaZ n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIX6_BREDI
Universal bacterial protein YeaZ {ECO:0000313|EMBL:EKY27913.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
SCNpilot_cont_300_bf_scaffold_4288_curated_7
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4046..4516
DNA (471bp) protein (157aa)
Ferric uptake regulator n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZT8_BREDI
Ferric uptake regulator {ECO:0000313|EMBL:EGF96025.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
Fur family ferric uptake regulator; K03711 Fur family transcriptional regulator, ferric uptake regulator
SCNpilot_cont_300_bf_scaffold_4288_curated_8
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(4440..5480)
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GJG8_9NEIS
Uncharacterized protein {ECO:0000313|EMBL:KIY11972.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
SCNpilot_cont_300_bf_scaffold_4288_curated_9
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5747..5917
DNA (171bp) protein (57aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminut
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QJQ2_BREDI
MiaB family RNA modification protein; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
SCNpilot_cont_300_bf_scaffold_4288_curated_10
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6022..7029
DNA (1008bp) protein (336aa)
PhoH family protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIR7_BREDI
PhoH family protein {ECO:0000313|EMBL:EKY27909.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
PhoH family protein; K06217 phosphate starvation-inducible protein PhoH and related proteins
SCNpilot_cont_300_bf_scaffold_4288_curated_11
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7029..7484
DNA (456bp) protein (152aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
Endoribonuclease YbeY n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZT6_BREDI
hypothetical protein; K07042 probable rRNA maturation factor
SCNpilot_cont_300_bf_scaffold_4288_curated_12
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8642..9046
DNA (405bp) protein (135aa)
Apolipoprotein N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148}; Short=ALP N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148};; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_01148};; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-]
Apolipoprotein N-acyltransferase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QK03_BREDI
SCNpilot_cont_300_bf_scaffold_4288_curated_13
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9148..9567
DNA (420bp) protein (140aa)
DNA-binding helix-turn-helix protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QJ02_BREDI
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EKY27906.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_4288_curated_14
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9645..10178)
DNA (534bp) protein (178aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|HAMAP-Rule:MF_01676, ECO:0000256|SAAS:SAAS00087942}; EC=1.11.1.15 {ECO:0000256|HAMAP-Rule:MF_01676, ECO:0000256|SAAS:SAAS00087930};; Alkylhydroperoxidase AhpD {ECO:0000256|HAMAP-Rule:MF_01676}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
alkylhydroperoxidase AhpD family (EC:1.11.1.15); K04756 alkyl hydroperoxide reductase subunit D
Alkyl hydroperoxide reductase AhpD n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZT4_BREDI
SCNpilot_cont_300_bf_scaffold_4288_curated_15
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10443..10997)
DNA (555bp) protein (185aa)
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]
Alkylhydroperoxide reductase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZT3_BREDI
Alkylhydroperoxide reductase {ECO:0000313|EMBL:EGF96020.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_4288_curated_16
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11226..12119
DNA (894bp) protein (298aa)
Putative hydrogen peroxide-inducible protein activator n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIW7_BREDI
Putative hydrogen peroxide-inducible protein activator {ECO:0000313|EMBL:EKY27903.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
LysR family transcriptional regulator; K04761 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
SCNpilot_cont_300_bf_scaffold_4288_curated_17
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12126..12602)
DNA (477bp) protein (159aa)
RES domain protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZT2_BREDI
RES domain protein {ECO:0000313|EMBL:EGF96019.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_4288_curated_18
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12610..13095)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZT1_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF96018.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_4288_curated_19
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13241..13993)
DNA (753bp) protein (251aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
aconitate hydratase 1; K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitate hydratase 1 n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZS9_BREDI
SCNpilot_cont_300_bf_scaffold_4288_curated_20
RIFOXYC12_FULL_Chloroflexi_59_14_curated, Chloroflexi, Bacteria

Not on your lists

14924..15178
DNA (255bp) protein (85aa)
Uncharacterized protein (Fragment) id=12551898 bin=BDI species=Xylella fastidiosa genus=Xylella taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFOXYC12_FULL_Chloroflexi_59_14_curated
SCNpilot_cont_300_bf_scaffold_4288_curated_21
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16087..16569
DNA (483bp) protein (161aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
heme exporter protein CcmA; K02193 heme exporter protein A [EC:3.6.3.41]
Heme ABC exporter, ATP-binding protein CcmA n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZS8_BREDI
SCNpilot_cont_300_bf_scaffold_4288_curated_22
unknown

Not on your lists

16569..16667
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4288_curated_23
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16664..17329
DNA (666bp) protein (222aa)
Heme exporter protein B n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIQ8_BREDI
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
heme exporter protein CcmB; K02194 heme exporter protein B
SCNpilot_cont_300_bf_scaffold_4288_curated_24
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17326..17946)
DNA (621bp) protein (207aa)
Smr protein/MutS2 n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QJY7_BRESC
Smr protein/MutS2
Smr protein/MutS2 {ECO:0000313|EMBL:ADK99738.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
SCNpilot_cont_300_bf_scaffold_4288_curated_25
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17949..18182)
DNA (234bp) protein (78aa)
Transcriptional regulator, Cro/CI family n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZS6_BREDI
Transcriptional regulator, Cro/CI family {ECO:0000313|EMBL:EGF96013.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
XRE family transcriptional regulator; K07727 putative transcriptional regulator
SCNpilot_cont_300_bf_scaffold_4288_curated_26
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18207..18821)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZS5_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF96012.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
Displaying 26 items

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