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SCNpilot_cont_300_bf_scaffold_1210_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1210_curated_1
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1076
DNA (1074bp) protein (358aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoyl dehydrogenase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXY2_BREDI
SCNpilot_cont_300_bf_scaffold_1210_curated_2
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2013..2369
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXY3_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF95753.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1210_curated_3
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2373..2708)
DNA (336bp) protein (112aa)
GIY-YIG catalytic domain protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXY4_BREDI
GIY-YIG catalytic domain protein {ECO:0000313|EMBL:EGF95754.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
excinuclease ABC C subunit domain-containing protein; K07461 putative endonuclease
SCNpilot_cont_300_bf_scaffold_1210_curated_4
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3173..4387)
DNA (1215bp) protein (405aa)
ATP-dependent chaperone ClpB n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXY5_BREDI
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
ATP-dependent chaperone ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
SCNpilot_cont_300_bf_scaffold_1210_curated_5
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5917..6549
DNA (633bp) protein (211aa)
LysE type translocator family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXY6_BREDI
LysE type translocator family protein {ECO:0000313|EMBL:EGF95756.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
lysine exporter LysE/YggA
SCNpilot_cont_300_bf_scaffold_1210_curated_6
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6566..8842)
DNA (2277bp) protein (759aa)
TonB dependent receptor family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXY7_BREDI
TonB dependent receptor family protein {ECO:0000313|EMBL:EGF95757.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
TonB-dependent receptor plug
SCNpilot_cont_300_bf_scaffold_1210_curated_7
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9007..10902
DNA (1896bp) protein (632aa)
Transporter, betaine/carnitine/choline family n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QK79_BREDI
Transporter, betaine/carnitine/choline family {ECO:0000313|EMBL:EKY27987.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
choline/carnitine/betaine transporter; K02168 high-affinity choline transport protein
SCNpilot_cont_300_bf_scaffold_1210_curated_8
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10975..12627
DNA (1653bp) protein (551aa)
Beta-lactamase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QJ76_BREDI
Beta-lactamase {ECO:0000313|EMBL:EKY27986.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
beta-lactamase
SCNpilot_cont_300_bf_scaffold_1210_curated_9
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12668..13069)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXZ0_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF95760.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1210_curated_10
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13142..13885)
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI0003640515
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
SCNpilot_cont_300_bf_scaffold_1210_curated_11
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13916..14641)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIY9_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY27984.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1210_curated_12
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14746..16071)
DNA (1326bp) protein (442aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4ZM83_THASP
Sensory box protein {ECO:0000313|EMBL:KIN89732.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
multi-sensor hybrid histidine kinase
SCNpilot_cont_300_bf_scaffold_1210_curated_13
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16154..17056)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QK74_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY27982.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1210_curated_14
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17010..18203)
DNA (1194bp) protein (398aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimon
protein-(glutamine-N5) methyltransferase, release factor-specific; K02493 release factor glutamine methyltransferase [EC:2.1.1.-]
Release factor glutamine methyltransferase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QJ71_BREDI
SCNpilot_cont_300_bf_scaffold_1210_curated_15
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18282..18965
DNA (684bp) protein (228aa)
YihY family protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QJV9_BREDI
YihY family protein {ECO:0000313|EMBL:EKY27980.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
ribonuclease BN; K07058 membrane protein
SCNpilot_cont_300_bf_scaffold_1210_curated_16
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18971..19552
DNA (582bp) protein (194aa)
Ribonuclease BN-like family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXZ3_BREDI
Ribonuclease BN-like family protein {ECO:0000313|EMBL:EGF95763.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
ribonuclease BN; K07058 membrane protein
SCNpilot_cont_300_bf_scaffold_1210_curated_17
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19549..20151)
DNA (603bp) protein (201aa)
Recombination protein RecR n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXZ4_BREDI
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
recombination protein RecR; K06187 recombination protein RecR
SCNpilot_cont_300_bf_scaffold_1210_curated_18
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20151..20480)
DNA (330bp) protein (110aa)
Nucleoid-associated protein BDIM_26090 n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXZ5_BREDI
Nucleoid-associated protein BDIM_26090 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein; K09747 hypothetical protein
SCNpilot_cont_300_bf_scaffold_1210_curated_19
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20655..21269
DNA (615bp) protein (205aa)
Putative NADH dehydrogenase/NAD(P)H nitroreductase BDIM_26100 {ECO:0000256|HAMAP-Rule:MF_01204}; EC=1.-.-.- {ECO:0000256|HAMAP-Rule:MF_01204};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
nitroreductase; K09019 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-]
Putative NADH dehydrogenase/NAD(P)H nitroreductase BDIM_26100 n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXZ6_BREDI
SCNpilot_cont_300_bf_scaffold_1210_curated_20
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21393..22316)
DNA (924bp) protein (308aa)
NUDIX hydrolase; K03426 NAD+ diphosphatase [EC:3.6.1.22]
NUDIX domain protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXZ7_BREDI
NUDIX domain protein {ECO:0000313|EMBL:EGF95767.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_1210_curated_21
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22646..23044
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QNZ6_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY29420.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1210_curated_22
Jannaschia aquimarina, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23351..24133)
DNA (783bp) protein (261aa)
Dual specificity phosphatase, catalytic domain protein n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NLX5_9RHOB
Jannaschia aquimarina strain GSW-M26 jaqu_contig000070, whole genome shotgun sequence {ECO:0000313|EMBL:KIT14629.1}; TaxID=935700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.;" source="Jannaschia aquimarina.;"
SCNpilot_cont_300_bf_scaffold_1210_curated_23
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24329..24691
DNA (363bp) protein (121aa)
DNA polymerase III subunits gamma/tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
DNA polymerase III, subunit gamma and tau n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QNC8_BREDI
DNA polymerase III, subunit gamma and tau {ECO:0000313|EMBL:EKY29421.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
Displaying 23 items

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