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SCNpilot_cont_300_bf_scaffold_1360_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1360_curated_1
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1040
DNA (1038bp) protein (346aa)
Amidohydrolase family protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIL3_BREDI
Amidohydrolase family protein {ECO:0000313|EMBL:EKY27844.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
amidohydrolase
SCNpilot_cont_300_bf_scaffold_1360_curated_2
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1716..2360
DNA (645bp) protein (215aa)
Amidohydrolase family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QY07_BREDI
Amidohydrolase family protein {ECO:0000313|EMBL:EGF95777.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
amidohydrolase
SCNpilot_cont_300_bf_scaffold_1360_curated_3
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2462..3247)
DNA (786bp) protein (262aa)
Short chain dehydrogenase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIU6_BREDI
Short chain dehydrogenase {ECO:0000313|EMBL:EKY27846.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_1360_curated_4
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3244..3540)
DNA (297bp) protein (99aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
transcriptional coactivator/pterin dehydratase; K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QJW0_BREDI
SCNpilot_cont_300_bf_scaffold_1360_curated_5
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3676..4461
DNA (786bp) protein (262aa)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
ubiquinone/menaquinone biosynthesis methyltransferase; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201]
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIR1_BREDI
SCNpilot_cont_300_bf_scaffold_1360_curated_6
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4449..6032
DNA (1584bp) protein (528aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
2-polyprenylphenol 6-hydroxylase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QY06_BREDI
2-polyprenylphenol 6-hydroxylase; K03688 ubiquinone biosynthesis protein
SCNpilot_cont_300_bf_scaffold_1360_curated_7
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6056..6553
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QJK8_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY27850.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1360_curated_8
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6554..6955)
DNA (402bp) protein (134aa)
RF-1 domain protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QY03_BREDI
RF-1 domain protein {ECO:0000313|EMBL:EGF95773.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
class I peptide chain release factor; K15034 ribosome-associated protein
SCNpilot_cont_300_bf_scaffold_1360_curated_9
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6952..7410)
DNA (459bp) protein (153aa)
UPF0178 protein HMPREF0185_01890 n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QJW4_BREDI
UPF0178 protein HMPREF0185_01890 {ECO:0000256|HAMAP-Rule:MF_00489}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein; K09768 hypothetical protein
SCNpilot_cont_300_bf_scaffold_1360_curated_10
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7565..9505)
DNA (1941bp) protein (647aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIM7_BREDI
SCNpilot_cont_300_bf_scaffold_1360_curated_11
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9502..9750)
DNA (249bp) protein (83aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QJP5_BREDI
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein; K08998 hypothetical protein
SCNpilot_cont_300_bf_scaffold_1360_curated_12
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9831..10379)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIK0_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY27788.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
NifU-like protein involved in Fe-S cluster formation
SCNpilot_cont_300_bf_scaffold_1360_curated_13
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10513..11322)
DNA (810bp) protein (270aa)
Tetratricopeptide repeat protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIG3_BREDI
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EKY27789.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1360_curated_14
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11412..12794
DNA (1383bp) protein (461aa)
Leucine aminopeptidase 2, chloroplastic {ECO:0000256|SAAS:SAAS00070899}; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00279693};; EC=3.4.11.1 {ECO:0000256|SAAS:SAAS00070892};; Leucine aminopeptidase 3, chloroplastic {ECO:0000256|SAAS:SAAS00070897}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
peptidase M17 leucyl aminopeptidase domain-containing protein; K01255 leucyl aminopeptidase [EC:3.4.11.1]
Cytosol aminopeptidase family, catalytic domain protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QJF8_BREDI
SCNpilot_cont_300_bf_scaffold_1360_curated_15
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12875..13675
DNA (801bp) protein (267aa)
NlpC/P60 family protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIN8_BREDI
NlpC/P60 family protein {ECO:0000313|EMBL:EKY27791.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
NLP/P60 protein
SCNpilot_cont_300_bf_scaffold_1360_curated_16
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13754..14476)
DNA (723bp) protein (241aa)
Cytochrome (Fragment) n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QNH0_BREDI
Cytochrome {ECO:0000313|EMBL:EKY29466.1}; Flags: Fragment;; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
cytochrome c class I; K08738 cytochrome c
SCNpilot_cont_300_bf_scaffold_1360_curated_17
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14610..15302
DNA (693bp) protein (231aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|SAAS:SAAS00089008};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38); K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
3-deoxy-D-manno-octulosonate cytidylyltransferase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXZ9_BREDI
Displaying 17 items

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