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SCNpilot_cont_300_bf_scaffold_1834_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1834_curated_1
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1505
DNA (1503bp) protein (501aa)
Organic solvent tolerance family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0W4_BREDI
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; Flags: Precursor;; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
organic solvent tolerance protein; K04744 LPS-assembly protein
SCNpilot_cont_300_bf_scaffold_1834_curated_2
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1608..2981
DNA (1374bp) protein (458aa)
Chaperone SurA {ECO:0000256|SAAS:SAAS00043023}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
PPIC-type PPIASE domain protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0W5_BREDI
SCNpilot_cont_300_bf_scaffold_1834_curated_3
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2978..3997
DNA (1020bp) protein (340aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262); K00097 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0W6_BREDI
SCNpilot_cont_300_bf_scaffold_1834_curated_4
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4059..4436
DNA (378bp) protein (126aa)
HsdR family type I site-specific deoxyribonuclease; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0W7_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF94990.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_1834_curated_5
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4433..5239
DNA (807bp) protein (269aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-
dimethyladenosine transferase; K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0W8_BREDI
SCNpilot_cont_300_bf_scaffold_1834_curated_6
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5236..6393
DNA (1158bp) protein (386aa)
Aminotransferase class I and II family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0W9_BREDI
Aminotransferase class I and II family protein {ECO:0000313|EMBL:EGF94992.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
class I and II aminotransferase
SCNpilot_cont_300_bf_scaffold_1834_curated_7
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6430..7470
DNA (1041bp) protein (347aa)
Putative peptidoglycan binding domain protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0X0_BREDI
Putative peptidoglycan binding domain protein {ECO:0000313|EMBL:EGF94993.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
ErfK/YbiS/YcfS/YnhG family protein
SCNpilot_cont_300_bf_scaffold_1834_curated_8
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7467..7919)
DNA (453bp) protein (151aa)
Guanine deaminase {ECO:0000313|EMBL:EGF94994.1}; EC=3.5.4.3 {ECO:0000313|EMBL:EGF94994.1};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
guanine deaminase (EC:3.5.4.3); K01487 guanine deaminase [EC:3.5.4.3]
Guanine deaminase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0X1_BREDI
SCNpilot_cont_300_bf_scaffold_1834_curated_9
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7925..8566)
DNA (642bp) protein (214aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8]
Guanylate kinase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0X2_BREDI
SCNpilot_cont_300_bf_scaffold_1834_curated_10
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8556..9452)
DNA (897bp) protein (299aa)
TIGR00255 family protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QMS9_BREDI
TIGR00255 family protein {ECO:0000313|EMBL:EKY28862.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
YicC domain-containing protein
SCNpilot_cont_300_bf_scaffold_1834_curated_11
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9449..10645)
DNA (1197bp) protein (399aa)
Aminodeoxychorismate lyase family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0X4_BREDI
Aminodeoxychorismate lyase family protein {ECO:0000313|EMBL:EGF94997.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
aminodeoxychorismate lyase; K07082 UPF0755 protein
SCNpilot_cont_300_bf_scaffold_1834_curated_12
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10647..11927)
DNA (1281bp) protein (427aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
3-oxoacyl-(acyl-carrier-protein) synthase 2; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QME0_BREDI
SCNpilot_cont_300_bf_scaffold_1834_curated_13
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12046..12285)
DNA (240bp) protein (80aa)
Acyl carrier protein n=2 Tax=Brevundimonas diminuta RepID=F4R0X5_BREDI
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
acyl carrier protein; K02078 acyl carrier protein
SCNpilot_cont_300_bf_scaffold_1834_curated_14
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12471..13211)
DNA (741bp) protein (247aa)
3-oxoacyl-acyl-carrier-protein reductase {ECO:0000313|EMBL:EGF94999.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EGF94999.1};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
3-oxoacyl-(acyl-carrier-protein) reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
3-oxoacyl-acyl-carrier-protein reductase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0X6_BREDI
SCNpilot_cont_300_bf_scaffold_1834_curated_15
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13388..14332)
DNA (945bp) protein (315aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
malonyl CoA-acyl carrier protein transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0X7_BREDI
SCNpilot_cont_300_bf_scaffold_1834_curated_16
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14434..15813)
DNA (1380bp) protein (460aa)
Ser/Thr phosphatase family protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QMN4_BREDI
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EKY28975.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
putative hydrolase
SCNpilot_cont_300_bf_scaffold_1834_curated_17
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15916..17184)
DNA (1269bp) protein (423aa)
Metal ion transport protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0Y0_BREDI
Metal ion transport protein {ECO:0000313|EMBL:EGF95003.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
metal ion transporter
SCNpilot_cont_300_bf_scaffold_1834_curated_18
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17774..18049
DNA (276bp) protein (92aa)
30S ribosomal protein S18 n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QLX5_BREDI
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18
SCNpilot_cont_300_bf_scaffold_1834_curated_19
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18051..18635
DNA (585bp) protein (195aa)
50S ribosomal protein L9 n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1D6_BREDI
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
50S ribosomal protein L9; K02939 large subunit ribosomal protein L9
SCNpilot_cont_300_bf_scaffold_1834_curated_20
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19087..21495
DNA (2409bp) protein (803aa)
TonB dependent receptor family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1D7_BREDI
TonB dependent receptor family protein {ECO:0000313|EMBL:EGF95009.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
TonB-dependent outer membrane receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_300_bf_scaffold_1834_curated_21
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21679..22056
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1D8_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF95010.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1834_curated_22
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22108..22509
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1D9_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF95011.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1834_curated_23
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22621..23043
DNA (423bp) protein (141aa)
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12]
Replicative DNA helicase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QM05_BREDI
Replicative DNA helicase {ECO:0000313|EMBL:EKY28966.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
Displaying 23 items

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