ggKbase home page

SCNpilot_cont_300_bf_scaffold_2563_curated

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2563_curated_1
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1383
DNA (1383bp) protein (461aa)
Putative ATP-dependent RNA helicase rhlE n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1C1_BREDI
Putative ATP-dependent RNA helicase rhlE {ECO:0000313|EMBL:EGF94248.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
DEAD/DEAH box helicase
SCNpilot_cont_300_bf_scaffold_2563_curated_2
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1466..2524
DNA (1059bp) protein (353aa)
Diguanylate cyclase GGDEF domain protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1C0_BREDI
Diguanylate cyclase GGDEF domain protein {ECO:0000313|EMBL:EGF94247.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
diguanylate cyclase; K13590 diguanylate cyclase
SCNpilot_cont_300_bf_scaffold_2563_curated_3
unknown

Not on your lists

comp(3146..3937)
DNA (792bp) protein (264aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2563_curated_4
unknown

Not on your lists

4186..4455
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2563_curated_5
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4599..4748)
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1B8_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF94245.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_2563_curated_6
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4819..6471)
DNA (1653bp) protein (551aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
CTP synthase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2]
CTP synthase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1B7_BREDI
SCNpilot_cont_300_bf_scaffold_2563_curated_7
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6596..7012)
DNA (417bp) protein (139aa)
Preprotein translocase, SecG subunit n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1B6_BREDI
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:EGF94243.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG
SCNpilot_cont_300_bf_scaffold_2563_curated_8
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7090..7260)
DNA (171bp) protein (57aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1]
Triosephosphate isomerase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1B5_BREDI
SCNpilot_cont_300_bf_scaffold_2563_curated_9
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7914..9824
DNA (1911bp) protein (637aa)
rotamase family protein; K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
Rotamase family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1B4_BREDI
Rotamase family protein {ECO:0000313|EMBL:EGF94241.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_2563_curated_10
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10517..11347
DNA (831bp) protein (277aa)
Anthranilate synthase component I {ECO:0000313|EMBL:EGF94240.1}; EC=4.1.3.27 {ECO:0000313|EMBL:EGF94240.1};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27]
Anthranilate synthase component I n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1B3_BREDI
SCNpilot_cont_300_bf_scaffold_2563_curated_11
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11659..12249
DNA (591bp) protein (197aa)
Anthranilate synthase component 2 {ECO:0000313|EMBL:EGF94238.1}; EC=4.1.3.27 {ECO:0000313|EMBL:EGF94238.1};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
glutamine amidotransferase; K01658 anthranilate synthase component II [EC:4.1.3.27]
Anthranilate synthase component 2 n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1B1_BREDI
SCNpilot_cont_300_bf_scaffold_2563_curated_12
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12249..13283
DNA (1035bp) protein (345aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
anthranilate phosphoribosyltransferase; K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18]
Anthranilate phosphoribosyltransferase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1B0_BREDI
SCNpilot_cont_300_bf_scaffold_2563_curated_13
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13283..14086
DNA (804bp) protein (268aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
trpC; indole-3-glycerol phosphate synthase; K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48]
Indole-3-glycerol phosphate synthase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1A9_BREDI
SCNpilot_cont_300_bf_scaffold_2563_curated_14
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14126..15292)
DNA (1167bp) protein (389aa)
Lipid-A-disaccharide synthase {ECO:0000313|EMBL:EGF94235.1}; EC=2.4.1.182 {ECO:0000313|EMBL:EGF94235.1};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
lipid-A-disaccharide synthase; K00748 lipid-A-disaccharide synthase [EC:2.4.1.182]
Lipid-A-disaccharide synthase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1A8_BREDI
SCNpilot_cont_300_bf_scaffold_2563_curated_15
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15374..16081)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QNQ2_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY29310.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein; K09949 hypothetical protein
SCNpilot_cont_300_bf_scaffold_2563_curated_16
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16078..16866)
DNA (789bp) protein (263aa)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|SAAS:SAAS00064156}; EC=2.3.1.129 {ECO:0000256|SAAS:SAAS00001267};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129); K00677 UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
Acyl-acyl-carrier-protein-UDP-N-acetylglucosamine O-acyltransferase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1A6_BREDI
SCNpilot_cont_300_bf_scaffold_2563_curated_17
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16863..17327)
DNA (465bp) protein (155aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; Beta-hydroxyacyl-ACP dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta
beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; K02372 3R-hydroxymyristoyl ACP dehydrase [EC:4.2.1.-]
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QMX1_BREDI
SCNpilot_cont_300_bf_scaffold_2563_curated_18
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17324..18250)
DNA (927bp) protein (309aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; K02536 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
UDP-3-O-acylglucosamine N-acyltransferase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QP33_BREDI
SCNpilot_cont_300_bf_scaffold_2563_curated_19
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18259..18843)
DNA (585bp) protein (195aa)
Outer membrane protein OmpH-like family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1A2_BREDI
Outer membrane protein OmpH-like family protein {ECO:0000313|EMBL:EGF94229.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
outer membrane chaperone Skp
SCNpilot_cont_300_bf_scaffold_2563_curated_20
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18878..21022)
DNA (2145bp) protein (715aa)
Outer membrane protein assembly factor BamA n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1A1_BREDI
Outer membrane protein assembly factor BamA {ECO:0000256|HAMAP-Rule:MF_01430, ECO:0000256|SAAS:SAAS00011174}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
outer membrane protein assembly complex, YaeT protein; K07277 outer membrane protein
SCNpilot_cont_300_bf_scaffold_2563_curated_21
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21302..22519)
DNA (1218bp) protein (406aa)
membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease [EC:3.4.24.-]
RIP metalloprotease RseP n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QMU6_BREDI
RIP metalloprotease RseP {ECO:0000313|EMBL:EKY29304.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
SCNpilot_cont_300_bf_scaffold_2563_curated_22
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22543..23217)
DNA (675bp) protein (225aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobact
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1A0_BREDI
SCNpilot_cont_300_bf_scaffold_2563_curated_23
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23671..24489)
DNA (819bp) protein (273aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41]
Phosphatidate cytidylyltransferase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R199_BREDI
SCNpilot_cont_300_bf_scaffold_2563_curated_24
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24491..25249)
DNA (759bp) protein (253aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
undecaprenyl diphosphate synthase; K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31]
Isoprenyl transferase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R198_BREDI
SCNpilot_cont_300_bf_scaffold_2563_curated_25
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25284..25460)
DNA (177bp) protein (59aa)
Ribosome-recycling factor n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R197_BREDI
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
ribosome recycling factor; K02838 ribosome recycling factor
SCNpilot_cont_300_bf_scaffold_2563_curated_26
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25526..25813)
DNA (288bp) protein (96aa)
Ribosome-recycling factor n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R197_BREDI
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
ribosome recycling factor; K02838 ribosome recycling factor
SCNpilot_cont_300_bf_scaffold_2563_curated_27
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25854..26366)
DNA (513bp) protein (171aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
uridylate kinase (EC:2.7.4.22); K09903 uridylate kinase [EC:2.7.4.22]
Uridylate kinase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R196_BREDI
Displaying 27 items

View Taxonomy