ggKbase home page

scnpilot_p_inoc_scaffold_2824_curated

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2824_curated_1
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1978
DNA (1977bp) protein (659aa)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HX13_9BURK
3-hydroxyacyl-CoA dehydrogenase
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_2824_curated_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1998..3191
DNA (1194bp) protein (398aa)
acetyl-CoA acetyltransferase (EC:2.3.1.16); K00632 acetyl-CoA acyltransferase [EC:2.3.1.16]
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:AEB83054.1}; EC=2.3.1.16 {ECO:0000313|EMBL:AEB83054.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Acetyl-CoA acetyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5G2_ALIDK
scnpilot_p_inoc_scaffold_2824_curated_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3378..4208
DNA (831bp) protein (277aa)
acyl-CoA thioesterase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003729772
uncharacterized LOC100490974
Uncharacterized protein {ECO:0000313|EMBL:GAD20320.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_2824_curated_4
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4231..5010
DNA (780bp) protein (260aa)
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Acidovorax sp. CF316 RepID=J1E9W5_9BURK
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:EJE49019.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
enoyL-CoA hydratase/isomerase
scnpilot_p_inoc_scaffold_2824_curated_5
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5012..5494
DNA (483bp) protein (161aa)
thioesterase n=1 Tax=Acidovorax radicis RepID=UPI0002375C07
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_2824_curated_6
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5670..6173
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TY50_ALIDB
hypothetical protein
Integral membrane protein CcmA {ECO:0000313|EMBL:GAO26383.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_2824_curated_7
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6205..6621)
DNA (417bp) protein (139aa)
thioesterase superfamily protein; K10806 acyl-CoA thioesterase YciA [EC:3.1.2.-]
thioesterase superfamily protein id=12551140 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_2824_curated_8
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6664..8496
DNA (1833bp) protein (611aa)
Xenobiotic-transporting ATPase (EC:3.6.3.44); K06147 ATP-binding cassette, subfamily B, bacterial
ABC transporter permease and ATPase id=12551141 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_2824_curated_9
Pararhodospirillum photometricum, Pararhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8521..11232)
DNA (2712bp) protein (904aa)
Putative diguanylate cyclase (GGDEF domain) n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SR77_RHOPH
Putative diguanylate cyclase (GGDEF domain)
Putative diguanylate cyclase (GGDEF domain) {ECO:0000313|EMBL:CCG09799.1}; TaxID=1150469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
scnpilot_p_inoc_scaffold_2824_curated_10
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11419..12450)
DNA (1032bp) protein (344aa)
TRAP dicarboxylate transporter, DctP subunit n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W3M6_ACISJ
TRAP dicarboxylate transporter subunit DctP
TRAP dicarboxylate transporter, DctP subunit {ECO:0000313|EMBL:ABM40851.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_2824_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12473..13771)
DNA (1299bp) protein (433aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TY60_ALIDB
trap dicarboxylate transporter, dctm subunit
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:ADU98459.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_2824_curated_12
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13768..14310)
DNA (543bp) protein (181aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T5P7_ACIDE
Tripartite ATP-independent periplasmic transporter DctQ component {ECO:0000313|EMBL:EER60190.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
tripartite ATP-independent periplasmic
scnpilot_p_inoc_scaffold_2824_curated_13
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14496..15437
DNA (942bp) protein (314aa)
LysR family transcriptional regulator n=1 Tax=Acidovorax sp. NO-1 RepID=H0BUK7_9BURK
uncharacterized HTH-type transcriptional regulator yjiE-like
LysR family transcriptional regulator {ECO:0000313|EMBL:EHL23979.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
scnpilot_p_inoc_scaffold_2824_curated_14
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15634..16521
DNA (888bp) protein (296aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Acidovorax sp. CF316 RepID=J1EEP2_9BURK
Periplasmic component of amino acid ABC-type transporter/signal transduction system {ECO:0000313|EMBL:EJE50821.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
family 3 extracellular solute-binding protein; K10001 glutamate/aspartate transport system substrate-binding protein
scnpilot_p_inoc_scaffold_2824_curated_15
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16627..17526
DNA (900bp) protein (300aa)
ABC transporter substrate-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000375731B
Family 3 extracellular solute-binding protein {ECO:0000313|EMBL:GAD20333.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
family 3 extracellular solute-binding protein; K10001 glutamate/aspartate transport system substrate-binding protein
scnpilot_p_inoc_scaffold_2824_curated_16
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17621..18373
DNA (753bp) protein (251aa)
glutamate ABC transporter permease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035E4DB8
Polar amino acid ABC transporter permease {ECO:0000313|EMBL:GAD20334.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
polar amino acid ABC transporter inner membrane subunit; K10003 glutamate/aspartate transport system permease protein
scnpilot_p_inoc_scaffold_2824_curated_17
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18375..19046
DNA (672bp) protein (224aa)
polar amino acid ABC transporter permease id=12551152 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
polar amino acid ABC transporter permease
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_2824_curated_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19073..19810
DNA (738bp) protein (246aa)
ABC transporter; K10004 glutamate/aspartate transport system ATP-binding protein [EC:3.6.3.-]
Phosphonate-transporting ATPase {ECO:0000313|EMBL:AEB83068.1}; EC=3.6.3.28 {ECO:0000313|EMBL:AEB83068.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYU0_ALIDB
scnpilot_p_inoc_scaffold_2824_curated_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19870..20568)
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036FB2D9
Uncharacterized protein {ECO:0000313|EMBL:GAD23850.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein; K09921 hypothetical protein
scnpilot_p_inoc_scaffold_2824_curated_20
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20565..21455)
DNA (891bp) protein (297aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
diaminopimelate epimerase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035C1A55
diaminopimelate epimerase-like
scnpilot_p_inoc_scaffold_2824_curated_21
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21535..21924
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WB39_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD35405.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
DoxX family protein; K15977 putative oxidoreductase
scnpilot_p_inoc_scaffold_2824_curated_22
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21933..22406
DNA (474bp) protein (158aa)
beta-lactamase domain-containing protein, partial n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI000237659B
Beta-lactamase {ECO:0000313|EMBL:KJA10764.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
beta-lactamase domain-containing protein
Displaying 22 items

View Taxonomy