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scnpilot_p_inoc_scaffold_1639_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1639_curated_1
unknown

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comp(1..78)
DNA (78bp) protein (26aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1639_curated_2
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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192..554
DNA (363bp) protein (121aa)
pilus biosynthesis protein PilZ n=1 Tax=Acidovorax radicis RepID=UPI0002377EE7
type IV pilus assembly PilZ
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
scnpilot_p_inoc_scaffold_1639_curated_3
unknown

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comp(605..712)
DNA (108bp) protein (36aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1639_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(777..2264)
DNA (1488bp) protein (496aa)
Rne/Rng family ribonuclease; K08301 ribonuclease G [EC:3.1.26.-]
ribonuclease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000365D9B5
Ribonuclease, Rne/Rng family {ECO:0000313|EMBL:ADU99903.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_1639_curated_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2401..3237)
DNA (837bp) protein (279aa)
uroporphyrin-III C-methyltransferase; K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
Uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:AEB84719.1}; EC=2.1.1.107 {ECO:0000313|EMBL:AEB84719.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Uroporphyrin-III C-methyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8U0G7_ALIDB
scnpilot_p_inoc_scaffold_1639_curated_6
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3451..5172
DNA (1722bp) protein (574aa)
nitrite reductase (EC:1.7.2.1); K15864 nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
Dissimilatory nitrite reductase (NO-forming), cytochrome cd1 type apoprotein {ECO:0000313|EMBL:ABM42092.1}; EC=1.7.2.1 {ECO:0000313|EMBL:ABM42092.1};; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Dissimilatory nitrite reductase (NO-forming), cytochrome cd1 type apoprotein n=2 Tax=Acidovorax RepID=A1W767_ACISJ
scnpilot_p_inoc_scaffold_1639_curated_7
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5194..5550
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MJ35_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM33173.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_1639_curated_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5547..6758
DNA (1212bp) protein (404aa)
protein nirF n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00036419D2
Cytochrome d1, heme region {ECO:0000313|EMBL:GAD22025.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
cytochrome d1 heme subunit
scnpilot_p_inoc_scaffold_1639_curated_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6783..7805
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U0G3_ALIDB
hypothetical protein
AsnC family transcriptional regulator {ECO:0000313|EMBL:GAO23491.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1639_curated_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7859..8344
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U0G3_ALIDB
hypothetical protein
AsnC family transcriptional regulator {ECO:0000313|EMBL:GAO23491.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1639_curated_11
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8334..8813
DNA (480bp) protein (160aa)
protein nirH n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036BD0CE
Transcriptional regulator {ECO:0000313|EMBL:GAD22022.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
putative AsnC family transcriptional regulator
scnpilot_p_inoc_scaffold_1639_curated_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8818..10038
DNA (1221bp) protein (407aa)
radical SAM protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037A005E
Radical SAM domain-containing protein {ECO:0000313|EMBL:GAD22021.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
radical SAM domain-containing protein
scnpilot_p_inoc_scaffold_1639_curated_13
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10031..11728
DNA (1698bp) protein (566aa)
Cytochrome d1 heme region n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MJ29_ACIET
cytochrome d1 heme region
Cytochrome d1 heme region {ECO:0000313|EMBL:ACM33167.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_1639_curated_14
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11725..12342
DNA (618bp) protein (206aa)
putative cytochrome c oxidase subunit 3 (EC:1.9.3.1); K02164 nitric oxide reductase NorE protein
cytochrome C oxidase n=1 Tax=Acidovorax radicis RepID=UPI00023754E1
Cytochrome c oxidase subunit III {ECO:0000313|EMBL:EER58931.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
scnpilot_p_inoc_scaffold_1639_curated_15
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12421..12690
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI00023754E0
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
scnpilot_p_inoc_scaffold_1639_curated_16
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12800..13234
DNA (435bp) protein (145aa)
cytochrome C n=1 Tax=Acidovorax radicis RepID=UPI00023754DF
putative nitric-oxide reductase subunit C; K02305 nitric oxide reductase subunit C
Tax=CG_Rhodof_02
scnpilot_p_inoc_scaffold_1639_curated_17
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13251..14744
DNA (1494bp) protein (498aa)
cytochrome c oxidase subunit I; K04561 nitric oxide reductase subunit B [EC:1.7.2.5]
Cytochrome b subunit of NO reductase, NorB {ECO:0000313|EMBL:BAL94062.1}; EC=1.7.2.5 {ECO:0000313|EMBL:BAL94062.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
nitric oxide reductase n=1 Tax=Acidovorax radicis RepID=UPI00023754DE
scnpilot_p_inoc_scaffold_1639_curated_18
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14821..15627
DNA (807bp) protein (269aa)
ATPase associated with various cellular activities AAA_5 n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y7Z3_LEPCP
protein norQ-like
ATPase associated with various cellular activities AAA_5 {ECO:0000313|EMBL:ACB33735.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
scnpilot_p_inoc_scaffold_1639_curated_19
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15703..17550
DNA (1848bp) protein (616aa)
Nitric oxide reductase activation protein NorD n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HM22_RUBGI
norD; nitric oxide reductase activation protein NorD; K02448 nitric oxide reductase NorD protein
Nitric oxide reductase activation protein NorD {ECO:0000313|EMBL:BAL94059.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
scnpilot_p_inoc_scaffold_1639_curated_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17758..18501
DNA (744bp) protein (248aa)
Cyclic nucleotide-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0F9_ALIDB
Crp/Fnr family transcriptional regulator
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:ADU99894.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_1639_curated_21
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18666..19271)
DNA (606bp) protein (202aa)
Maf-like protein Alide_2154 n=2 Tax=Alicycliphilus denitrificans RepID=E8U0F8_ALIDB
uncharacterized LOC100495456
Maf-like protein ALISP_3316 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1639_curated_22
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19321..19788)
DNA (468bp) protein (156aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KK
Ribosomal RNA large subunit methyltransferase H n=2 Tax=Acidovorax RepID=K0I1P9_9BURK
rRNA large subunit methyltransferase
scnpilot_p_inoc_scaffold_1639_curated_23
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19806..20552)
DNA (747bp) protein (249aa)
Ribosomal silencing factor RsfS n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MJ25_ACIET
uncharacterized LOC100495456
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_1639_curated_24
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20733..21677)
DNA (945bp) protein (315aa)
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TS25_ACIAC
coproporphyrinogen-III oxidase, aerobic-like
scnpilot_p_inoc_scaffold_1639_curated_25
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21677..22957)
DNA (1281bp) protein (427aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
phosphoribosylamine/glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13]
phosphoribosylamine--glycine ligase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000376EED3
scnpilot_p_inoc_scaffold_1639_curated_26
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22986..23705)
DNA (720bp) protein (240aa)
Probable transcriptional regulatory protein HGR_00425 n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KNU0_9BURK
Probable transcriptional regulatory protein AX13_00585 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1639_curated_27
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23948..25465
DNA (1518bp) protein (506aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I1Q3_9BURK
ATP-binding protein {ECO:0000313|EMBL:KJA12425.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
Displaying 27 items

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