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scnpilot_p_inoc_scaffold_2032_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2032_curated_1
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..831)
DNA (831bp) protein (277aa)
protein serine/threonine phosphatase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037524D5
protein serine/threonine phosphatase
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_2032_curated_2
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(828..1850)
DNA (1023bp) protein (341aa)
Serine/threonine protein kinase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HP11_9BURK
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:AFU44708.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_2032_curated_3
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1929..2840
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HV93_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU44707.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_2032_curated_4
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2906..3526
DNA (621bp) protein (207aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
gmk; guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T347_ACIDE
scnpilot_p_inoc_scaffold_2032_curated_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3545..3748
DNA (204bp) protein (68aa)
DNA-directed RNA polymerase, omega subunit; K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphi
DNA-directed RNA polymerase subunit omega n=4 Tax=Comamonadaceae RepID=RPOZ_ACIET
scnpilot_p_inoc_scaffold_2032_curated_6
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3848..6112
DNA (2265bp) protein (755aa)
(P)ppGpp synthetase I SpoT/RelA n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0N2_9BURK
guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase-like
(P)ppGpp synthetase I SpoT/RelA {ECO:0000313|EMBL:AFU44704.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_2032_curated_7
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6116..6682)
DNA (567bp) protein (189aa)
Transcription elongation factor GreB n=1 Tax=Acidovorax sp. KKS102 RepID=K0HP08_9BURK
transcription elongation factor GreB
Transcription elongation factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; Transcript cleavage factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_2032_curated_8
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6810..7232)
DNA (423bp) protein (141aa)
Transcription elongation factor GreB n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T350_ACIDE
Transcription elongation factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; Transcript cleavage factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
transcription elongation factor GreB
scnpilot_p_inoc_scaffold_2032_curated_9
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7824..8981
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QLV9_BORBO
hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKI14323.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
scnpilot_p_inoc_scaffold_2032_curated_10
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9576..10439
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri RCH2 RepID=L0GI27_PSEST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA85661.1}; TaxID=644801 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri RCH2.;"
scnpilot_p_inoc_scaffold_2032_curated_11
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10524..13604)
DNA (3081bp) protein (1027aa)
hypothetical protein; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
Uncharacterized protein n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1GY15_METFK
Uncharacterized protein {ECO:0000313|EMBL:ABE50872.1}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
scnpilot_p_inoc_scaffold_2032_curated_12
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13608..14219)
DNA (612bp) protein (204aa)
Putative uncharacterized protein n=1 Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0A7Q3_ALKEH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI57134.1}; TaxID=187272 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
scnpilot_p_inoc_scaffold_2032_curated_13
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14216..15508)
DNA (1293bp) protein (431aa)
restriction modification system DNA specificity subunit; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
Restriction modification system DNA specificity domain protein n=1 Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0A7Q2_ALKEH
Restriction modification system DNA specificity domain protein {ECO:0000313|EMBL:ABI57135.1}; TaxID=187272 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
scnpilot_p_inoc_scaffold_2032_curated_14
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15505..16593)
DNA (1089bp) protein (363aa)
Virulence protein n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1GY17_METFK
virulence protein
Virulence protein {ECO:0000313|EMBL:ABE50870.1}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
scnpilot_p_inoc_scaffold_2032_curated_15
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16590..18776)
DNA (2187bp) protein (729aa)
N-6 DNA methylase; K03427 type I restriction enzyme M protein [EC:2.1.1.72]
N-6 DNA methylase n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1GY18_METFK
N-6 DNA methylase {ECO:0000313|EMBL:ABE50869.1}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
scnpilot_p_inoc_scaffold_2032_curated_16
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18858..19850)
DNA (993bp) protein (331aa)
Restriction endonuclease n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RZL1_9BURK
Restriction endonuclease {ECO:0000313|EMBL:EFV94005.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
Restriction endonuclease
scnpilot_p_inoc_scaffold_2032_curated_17
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19877..20092)
DNA (216bp) protein (72aa)
Transcriptional regulator, MarR family n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RZL2_9BURK
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EFV94006.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2032_curated_18
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20474..21685)
DNA (1212bp) protein (404aa)
Integrase n=1 Tax=Thauera phenylacetica B4P RepID=N6Z1I0_9RHOO
Integrase {ECO:0000313|EMBL:ENO97735.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
integrase
scnpilot_p_inoc_scaffold_2032_curated_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21882..22976)
DNA (1095bp) protein (365aa)
GTP-binding protein YchF n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000379F483
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
GTP-binding protein YchF; K06942
scnpilot_p_inoc_scaffold_2032_curated_20
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23065..24219
DNA (1155bp) protein (385aa)
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T398_ACIDE
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family {ECO:0000313|EMBL:EER61062.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase
scnpilot_p_inoc_scaffold_2032_curated_21
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24223..24987
DNA (765bp) protein (255aa)
disulfide bond isomerase, DsbC/G; K03981 thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
Disulfide bond isomerase, DsbC/G-like protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TR15_ALIDB
Disulfide isomerase {ECO:0000313|EMBL:KJA09977.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
scnpilot_p_inoc_scaffold_2032_curated_22
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25082..26866
DNA (1785bp) protein (595aa)
Peptidase M61 domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GFT5_ALIDK
Peptidase m61 domain-containing protein {ECO:0000313|EMBL:GAO24918.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
peptidase M61 domain-containing protein
scnpilot_p_inoc_scaffold_2032_curated_23
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26921..27700
DNA (780bp) protein (260aa)
enoyl-CoA hydratase/isomerase; K01692 enoyl-CoA hydratase [EC:4.2.1.17]
enoyl-CoA hydratase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003626732
Short chain enoyl-CoA hydratase {ECO:0000313|EMBL:GAD23780.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_2032_curated_24
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27890..29227
DNA (1338bp) protein (446aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000255|HAMAP-Rule:MF_01864}; EC=2.8.4.3 {ECO:0000255|HAMAP-Rule:MF_01864};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000255|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000255|HAMAP-Rule:MF_01864}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Acidovorax sp. (strain JS42) RepID=MIAB_ACISJ rbh
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
scnpilot_p_inoc_scaffold_2032_curated_25
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29430..30734)
DNA (1305bp) protein (435aa)
Putative amino acid aldolase or racemase n=1 Tax=Acidovorax sp. CF316 RepID=J1E8K9_9BURK
Putative amino acid aldolase or racemase {ECO:0000313|EMBL:EJE48614.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
ptpT; deaminase
scnpilot_p_inoc_scaffold_2032_curated_26
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30809..31855)
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A547_METMM
hypothetical protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
scnpilot_p_inoc_scaffold_2032_curated_27
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31965..32777)
DNA (813bp) protein (271aa)
Redoxin domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0J4_ALIDB
Redoxin domain-containing protein
Redoxin domain-containing protein {ECO:0000313|EMBL:GAO23454.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Displaying 27 items

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