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SCNpilot_bf_inoc_scaffold_769_curated

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_769_curated_1
unknown

Not on your lists

comp(1..69)
DNA (69bp) protein (23aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_769_curated_2
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41..514)
DNA (474bp) protein (158aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI000378B17D
hypothetical protein; K07065
SCNpilot_bf_inoc_scaffold_769_curated_3
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(985..2019)
DNA (1035bp) protein (345aa)
ABC transporter permease n=1 Tax=Acidovorax radicis RepID=UPI00023782C5
binding-protein-dependent transport system inner membrane protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_bf_inoc_scaffold_769_curated_4
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2391..2789
DNA (399bp) protein (133aa)
Metallophosphoesterase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W3D1_ACISJ
Cyclic 3',5'-adenosine monophosphate phosphodiesterase {ECO:0000313|EMBL:EWS62137.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
metallophosphoesterase
SCNpilot_bf_inoc_scaffold_769_curated_5
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2804..3667)
DNA (864bp) protein (288aa)
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KNX7_9BURK
4-hydroxybenzoyl-CoA thioesterase {ECO:0000313|EMBL:EGI78554.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
4-hydroxybenzoyl-CoA thioesterase
SCNpilot_bf_inoc_scaffold_769_curated_6
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3741..4658)
DNA (918bp) protein (306aa)
Triacylglycerol lipase (Lipase)-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XXU5_RAMTT
Esterase/lipase {ECO:0000313|EMBL:GAD22128.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
Triacylglycerol lipase
SCNpilot_bf_inoc_scaffold_769_curated_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4777..5760)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EC6996
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACF52832.1}; Flags: Precursor;; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
SCNpilot_bf_inoc_scaffold_769_curated_8
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6149..7054)
DNA (906bp) protein (302aa)
Hydratase/decarboxylase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HS69_9BURK
hydratase/decarboxylase
Hydratase/decarboxylase {ECO:0000313|EMBL:AFU45833.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_bf_inoc_scaffold_769_curated_9
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7127..8263
DNA (1137bp) protein (379aa)
alcohol dehydrogenase (EC:1.1.1.1)
Alcohol dehydrogenase {ECO:0000313|EMBL:ADX45731.1}; EC=1.1.1.1 {ECO:0000313|EMBL:ADX45731.1};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
Alcohol dehydrogenase n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q756_ACIAP
SCNpilot_bf_inoc_scaffold_769_curated_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8377..8841)
DNA (465bp) protein (155aa)
Transcriptional regulator, MerR family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CTJ2_VARPS
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ACS20180.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_bf_inoc_scaffold_769_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8949..11228
DNA (2280bp) protein (760aa)
heavy metal translocating P-type ATPase; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00035C23C5
Variovorax paradoxus strain MEDvA23 contig_5, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ36839.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_bf_inoc_scaffold_769_curated_12
unknown

Not on your lists

11378..11641
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_769_curated_13
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11704..14094)
DNA (2391bp) protein (797aa)
RNA-binding protein n=1 Tax=Brachymonas chironomi RepID=UPI00035EB1B1
RNA binding S1 domain protein {ECO:0000313|EMBL:EGI76378.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
RNA-binding S1 domain-containing protein; K06959 uncharacterized protein
SCNpilot_bf_inoc_scaffold_769_curated_14
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14187..15443)
DNA (1257bp) protein (419aa)
periplasmic sensor signal transduction histidine kinase id=5082118 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
periplasmic sensor signal transduction histidine kinase
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_bf_inoc_scaffold_769_curated_15
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15520..16308)
DNA (789bp) protein (263aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VND3_POLNA
two component LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ABM37161.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_bf_inoc_scaffold_769_curated_16
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16812..17288
DNA (477bp) protein (159aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BVZ0_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_bf_inoc_scaffold_769_curated_17
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17389..17826
DNA (438bp) protein (146aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BVY9_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL23368.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_769_curated_18
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17944..19599
DNA (1656bp) protein (552aa)
Putative uncharacterized protein id=1268585 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_bf_inoc_scaffold_769_curated_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19665..20903
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003690EC7
Sel1 domain protein repeat-containing protein {ECO:0000313|EMBL:GAD24996.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
Sel1 domain-containing protein
SCNpilot_bf_inoc_scaffold_769_curated_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20929..21846)
DNA (918bp) protein (306aa)
Short-chain alcohol dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2TC63_9BURK
Short-chain alcohol dehydrogenase {ECO:0000313|EMBL:EJL75762.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_769_curated_21
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21870..23516)
DNA (1647bp) protein (549aa)
Acyl-CoA dehydrogenase domain-containing protein id=1268591 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
acyL-CoA dehydrogenase domain-containing protein; K09456 putative acyl-CoA dehydrogenase
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_bf_inoc_scaffold_769_curated_22
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23529..24545)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2X7N3_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD41187.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
alcohol dehydrogenase; K07119
SCNpilot_bf_inoc_scaffold_769_curated_23
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24632..25054)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00030C093D
phenylacetic acid degradation-like protein
Phenylacetic acid degradation-related protein {ECO:0000313|EMBL:ABE44482.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_bf_inoc_scaffold_769_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25051..25845)
DNA (795bp) protein (265aa)
short-chain dehydrogenase/reductase sdr; K00046 gluconate 5-dehydrogenase [EC:1.1.1.69]
Short-chain dehydrogenase/reductase SDR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9Y1_VARPE
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADU37365.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_bf_inoc_scaffold_769_curated_25
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25865..26167)
DNA (303bp) protein (101aa)
stress responsive protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI0003726225
Protein containing stress responsive alpha-beta barrel domain {ECO:0000313|EMBL:ELX08576.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_769_curated_26
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26167..27999)
DNA (1833bp) protein (611aa)
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HTR9_9BURK
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KJA10417.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
acyl-CoA dehydrogenase domain-containing protein
SCNpilot_bf_inoc_scaffold_769_curated_27
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28164..28841)
DNA (678bp) protein (226aa)
Candidate ankyrin repeat harboring protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XXT7_RAMTT
ankyrin repeat harboring protein; K06867
Candidate ankyrin repeat harboring protein {ECO:0000313|EMBL:AEG93072.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_769_curated_28
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28838..29644)
DNA (807bp) protein (269aa)
deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-]
Deoxyribonuclease-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XXT8_RAMTT
Deoxyribonuclease-like protein {ECO:0000313|EMBL:AEG93073.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_769_curated_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29724..30095)
DNA (372bp) protein (124aa)
Type IV pilus assembly pilz n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0Q5_9BURK
type iv pilus assembly pilz; K02676 type IV pilus assembly protein PilZ
Type IV pilus assembly PilZ {ECO:0000313|EMBL:AEB85535.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_769_curated_30
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30243..31073)
DNA (831bp) protein (277aa)
DNA-directed DNA polymerase (EC:2.7.7.7); K02341 DNA polymerase III subunit delta' [EC:2.7.7.7]
DNA-directed DNA polymerase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036F82F8
ATPase involved in DNA replication {ECO:0000313|EMBL:GAD22123.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
Displaying items 1-30 of 44 in total

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