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SCNpilot_expt_1000_bf_scaffold_2549_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2549_curated_1
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..525
DNA (525bp) protein (175aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;"
DNA topoisomerase III (EC:5.99.1.2)
DNA topoisomerase n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HYT2_PSEUO
SCNpilot_expt_1000_bf_scaffold_2549_curated_2
unknown

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comp(1068..1166)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2549_curated_3
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1233..2186)
DNA (954bp) protein (318aa)
molybdenum cofactor biosynthesis protein MoeA n=1 Tax=Chryseobacterium taeanense RepID=UPI00031F398F
molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_1000_bf_scaffold_2549_curated_4
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2449..3096)
DNA (648bp) protein (216aa)
Nitroreductase n=1 Tax=Acidovorax sp. NO-1 RepID=E3UH35_9BURK
Nitroreductase {ECO:0000313|EMBL:ADO32568.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
nitroreductase
SCNpilot_expt_1000_bf_scaffold_2549_curated_5
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3149..3463)
DNA (315bp) protein (105aa)
Cytochrome c class I n=1 Tax=Acidovorax sp. NO-1 RepID=E3UH34_9BURK
Cytochrome c class I {ECO:0000313|EMBL:ADO32567.1}; Cytochrome c, class I {ECO:0000313|EMBL:EHL22938.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
cytochrome C, class I
SCNpilot_expt_1000_bf_scaffold_2549_curated_6
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3531..6014)
DNA (2484bp) protein (828aa)
arsenate reductase (azurin) (EC:1.20.98.1); K08356 arsenite oxidase large subunit [EC:1.20.9.1]
Arsenite oxidase large subunit id=1265332 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_1000_bf_scaffold_2549_curated_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6025..6549)
DNA (525bp) protein (175aa)
twin-arginine translocation pathway signal protein (EC:1.20.98.1); K08355 arsenite oxidase small subunit [EC:1.20.9.1]
Arsenite oxidase small subunit Rieske type subunit id=1265333 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_1000_bf_scaffold_2549_curated_8
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6818..7576
DNA (759bp) protein (253aa)
phosphonate-binding periplasmic protein id=5081120 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
phosphonate-binding periplasmic protein
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_1000_bf_scaffold_2549_curated_9
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7576..9021
DNA (1446bp) protein (482aa)
Periplasmic sensor signal transduction histidine kinase id=1265335 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
periplasmic sensor signal transduction histidine kinase
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_1000_bf_scaffold_2549_curated_10
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9018..10325
DNA (1308bp) protein (436aa)
Fis family two component sigma-54 specific transcriptional regulator id=5081118 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Fis family two component sigma-54 specific transcriptional regulator
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_1000_bf_scaffold_2549_curated_11
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10388..10753)
DNA (366bp) protein (122aa)
Arsenical resistance protein ArsH n=1 Tax=Ralstonia pickettii (strain 12D) RepID=C6BDL2_RALP1
arsenical resistance protein ArsH; K11811 arsenical resistance protein ArsH
Arsenical resistance protein ArsH {ECO:0000313|EMBL:ACS61947.1}; TaxID=428406 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12D).;"
Displaying 11 items

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