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SCNpilot_expt_1000_bf_scaffold_1314_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1314_curated_1
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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2..334
DNA (333bp) protein (111aa)
Cobalamin B12-binding domain-containing protein n=1 Tax=Thauera phenylacetica B4P RepID=N6ZTZ7_9RHOO
Cobalamin B12-binding domain-containing protein {ECO:0000313|EMBL:ENO95619.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
B12 binding domain/Pterin binding enzyme
SCNpilot_expt_1000_bf_scaffold_1314_curated_2
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

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363..1076
DNA (714bp) protein (238aa)
Vitamin B12 dependent methionine synthase activation protein
Vitamin B12 dependent methionine synthase id=2272801 bin=GWB2_Chloroflexi_54_36 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_expt_1000_bf_scaffold_1314_curated_3
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1088..2914
DNA (1827bp) protein (609aa)
Ferredoxin (Fragment) n=1 Tax=Thauera phenylacetica B4P RepID=N6Y8Z4_9RHOO
ferredoxin
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_expt_1000_bf_scaffold_1314_curated_4
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

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2911..3792
DNA (882bp) protein (294aa)
dihydropteroate synthase DHPS; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
Dihydropteroate synthase DHPS n=1 Tax=Thauera phenylacetica B4P RepID=N6ZUH0_9RHOO
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_expt_1000_bf_scaffold_1314_curated_5
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3798..5000
DNA (1203bp) protein (401aa)
Amidohydrolase n=1 Tax=Thauera phenylacetica B4P RepID=N6YV28_9RHOO
amidohydrolase
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_expt_1000_bf_scaffold_1314_curated_6
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5118..5597
DNA (480bp) protein (160aa)
Transcriptional regulator, MarR family n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RRE1_9PROT
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EFH10123.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1314_curated_7
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5739..6536
DNA (798bp) protein (266aa)
abmB; beta-hydroxyacyl-CoA dehydrogenase AbmB (EC:1.1.1.-)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Cupriavidus sp. UYPR2.512 RepID=UPI0003731DF9
Short-chain dehydrogenase {ECO:0000313|EMBL:AGW91160.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
SCNpilot_expt_1000_bf_scaffold_1314_curated_8
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6537..8156
DNA (1620bp) protein (540aa)
crotonobetaine/carnitine-CoA ligase; K02182 crotonobetaine/carnitine-CoA ligase [EC:6.2.1.-]
Crotonobetaine/carnitine-CoA ligase n=1 Tax=Alcaligenes sp. EGD-AK7 RepID=U1ZP20_9BURK
Crotonobetaine/carnitine-CoA ligase {ECO:0000313|EMBL:ERI32811.1}; TaxID=1386079 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
SCNpilot_expt_1000_bf_scaffold_1314_curated_9
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8268..9725
DNA (1458bp) protein (486aa)
NADH:flavin oxidoreductase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2Z4I3_9PROT
NADH:flavin oxidoreductase {ECO:0000313|EMBL:EME69275.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
NADH:flavin oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1314_curated_10
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

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9746..11425
DNA (1680bp) protein (560aa)
AMP-dependent synthetase and ligase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2ZMI4_9PROT
AMP-dependent synthetase and ligase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_expt_1000_bf_scaffold_1314_curated_11
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11467..12636
DNA (1170bp) protein (390aa)
Extracellular ligand-binding receptor n=2 Tax=Alcaligenes xylosoxydans xylosoxydans RepID=E5U8B1_ALCXX
putative ABC transporter subunit
Putative ABC transporter subunit {ECO:0000313|EMBL:CCH05615.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
SCNpilot_expt_1000_bf_scaffold_1314_curated_12
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12667..13578
DNA (912bp) protein (304aa)
ABC transporter permease n=1 Tax=Bordetella sp. FB-8 RepID=UPI00037BC22D
inner-membrane translocator
Inner-membrane translocator 57 {ECO:0000313|EMBL:ADP19195.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_expt_1000_bf_scaffold_1314_curated_13
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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13586..14554
DNA (969bp) protein (323aa)
Inner-membrane translocator 58 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HJG4_ACHXA
ABC transporter permease {ECO:0000313|EMBL:KGY27237.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1314_curated_14
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14547..15296
DNA (750bp) protein (250aa)
ABC transporter (EC:3.6.3.-); K01995 branched-chain amino acid transport system ATP-binding protein
ABC transporter family protein 90 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HJG5_ACHXA
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGY27238.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
SCNpilot_expt_1000_bf_scaffold_1314_curated_15
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15296..15997
DNA (702bp) protein (234aa)
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) n=2 Tax=Alcaligenes xylosoxydans xylosoxydans RepID=R4XLU7_ALCXX
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1
Branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:AHC45010.1}; TaxID=1216976 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NBRC 15126 = ATCC 27061.;"
SCNpilot_expt_1000_bf_scaffold_1314_curated_16
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16070..16288)
DNA (219bp) protein (73aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y2R6_LEPCP
Transcriptional regulator {ECO:0000313|EMBL:BAP89825.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1314_curated_17
unknown

Not on your lists

16638..16781
DNA (144bp) protein (48aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00037D6ACF
Displaying 17 items

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