ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1180_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1180_curated_1
unknown

Not on your lists

181..399
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1180_curated_2
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(748..1053)
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Ralstonia solanacearum K60-1 RepID=H5WCH2_RALSL
Putative uncharacterized protein {ECO:0000313|EMBL:CCF97493.1}; TaxID=1091042 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum K60-1.;"
membrane protein
SCNpilot_expt_1000_bf_scaffold_1180_curated_3
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1053..3293)
DNA (2241bp) protein (747aa)
ABC transporter related n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RST7_ACCPU
ABC transporter
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
SCNpilot_expt_1000_bf_scaffold_1180_curated_4
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3881..4075
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 PF8_9BURK">RepID=F3LPF8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ10226.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1180_curated_5
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4040..5749)
DNA (1710bp) protein (570aa)
Uncharacterized protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IQT1_BORPD
hypothetical protein; K07175 PhoH-like ATPase
Uncharacterized protein {ECO:0000313|EMBL:CAP43093.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_1180_curated_6
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5788..6249)
DNA (462bp) protein (154aa)
AhpC/Tsa family antioxidant; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
Antioxidant, AhpC/Tsa family protein n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5AFE7_BURGB
Antioxidant, AhpC/Tsa family protein {ECO:0000313|EMBL:ACR28554.1}; TaxID=626418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae (strain BGR1).;"
SCNpilot_expt_1000_bf_scaffold_1180_curated_7
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6519..8366
DNA (1848bp) protein (616aa)
HipA domain-containing protein; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1]
HipA domain protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ICR9_XANP2
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_expt_1000_bf_scaffold_1180_curated_8
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8401..8772)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46ZS4_CUPPJ
hypothetical protein; K09008 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ61359.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCNpilot_expt_1000_bf_scaffold_1180_curated_9
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8828..10033
DNA (1206bp) protein (402aa)
Aminotransferase {ECO:0000313|EMBL:KCB34907.1}; EC=2.6.1.- {ECO:0000313|EMBL:KCB34907.1};; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
aminotransferase (EC:2.6.1.-); K14261 alanine-synthesizing transaminase [EC:2.6.1.-]
Putative aminotransferase n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KZ37_BORA1
SCNpilot_expt_1000_bf_scaffold_1180_curated_10
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10033..11397
DNA (1365bp) protein (455aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
homoserine dehydrogenase (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3]
Homoserine dehydrogenase n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SCJ4_9BURK
SCNpilot_expt_1000_bf_scaffold_1180_curated_11
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11412..12863
DNA (1452bp) protein (484aa)
threonine synthase; K01733 threonine synthase [EC:4.2.3.1]
Threonine synthase n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GLH0_NITSI
Threonine synthase {ECO:0000313|EMBL:AEJ00716.1}; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
SCNpilot_expt_1000_bf_scaffold_1180_curated_12
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12944..13465
DNA (522bp) protein (174aa)
Molybdopterin-guanine dinucleotide biosynthesis protein B n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RU23_9BURK
Molybdopterin-guanine dinucleotide biosynthesis protein B {ECO:0000313|EMBL:EFV96259.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
mobB1; molybdopterin-guanine dinucleotide biosynthesis protein B; K03753 molybdopterin-guanine dinucleotide biosynthesis protein B
SCNpilot_expt_1000_bf_scaffold_1180_curated_13
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13437..14672
DNA (1236bp) protein (412aa)
moeA; molybdopterin biosynthesis protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1]
Molybdopterin biosynthesis protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SCJ2_9BURK
Molybdopterin biosynthesis protein {ECO:0000313|EMBL:EHP39817.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
SCNpilot_expt_1000_bf_scaffold_1180_curated_14
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14669..14926
DNA (258bp) protein (86aa)
Molybdopterin biosynthesis protein D n=2 Tax=Cupriavidus necator RepID=Q0K9G1_CUPNH
moaD; molybdopterin biosynthesis protein D; K03636 molybdopterin synthase sulfur carrier subunit
Molybdopterin synthase sulfur carrier subunit {ECO:0000256|RuleBase:RU362014}; TaxID=106590 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (Alcaligenes eutrophus) (Ralstonia eutropha).;"
SCNpilot_expt_1000_bf_scaffold_1180_curated_15
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14952..15224
DNA (273bp) protein (91aa)
Post-segregation antitoxin (Ccd killing mechanism protein) encoded by the F plasmid n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HQB5_PSEUO
Acetoacetyl-CoA synthase {ECO:0000313|EMBL:ETM66142.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;"
CcdB antidote CcdA
SCNpilot_expt_1000_bf_scaffold_1180_curated_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15241..15552
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6ACF9_PSERE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_1180_curated_17
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15555..16001
DNA (447bp) protein (149aa)
molybdopterin synthase subunit MoaE; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-]
Molybdopterin synthase subunit MoaE n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47CH2_DECAR
Molybdenum cofactor biosynthesis protein MoaE {ECO:0000313|EMBL:KHQ96917.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
SCNpilot_expt_1000_bf_scaffold_1180_curated_18
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15998..16909
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UDN2_9RHOB
DMT superfamily permease
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_expt_1000_bf_scaffold_1180_curated_19

Not on your lists

16991..17281
DNA (291bp) protein (97aa)
Protein containing DUF1778 n=1 Tax=mine drainage metagenome RepID=T1AZD8_9ZZZZ
Protein containing DUF1778 {ECO:0000313|EMBL:EQD62927.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1180_curated_20
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17412..18044)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7D3_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB75338.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Displaying 20 items

View Taxonomy