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SCNpilot_expt_1000_bf_scaffold_947_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_947_curated_1
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..1033)
DNA (1032bp) protein (344aa)
cation diffusion facilitator family transporter id=12495454 bin=THIO_HI species=Thauera phenylacetica genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:ENO97988.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
cation diffusion facilitator family transporter
SCNpilot_expt_1000_bf_scaffold_947_curated_2
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1042..1380)
DNA (339bp) protein (113aa)
hypothetical protein id=12495453 bin=THIO_HI species=Ideonella sp. B508-1 genus=Ideonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:ENO97989.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_947_curated_3
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1397..2038)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VHJ5_9GAMM
hypothetical protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_expt_1000_bf_scaffold_947_curated_4
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2951..3841
DNA (891bp) protein (297aa)
PaaX domain protein, C-domain n=2 Tax=Pseudomonas aeruginosa RepID=A6UZR6_PSEA7
PaaX domain-containing protein; K02616 phenylacetic acid degradation operon negative regulatory protein
Uncharacterized protein {ECO:0000313|EMBL:KFF36348.1}; TaxID=1262663 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA01.;"
SCNpilot_expt_1000_bf_scaffold_947_curated_5
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3838..5520
DNA (1683bp) protein (561aa)
Acyl-CoA dehydrogenase-like n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q221M8_RHOFD
acyl-CoA dehydrogenase-like protein; K09456 putative acyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_expt_1000_bf_scaffold_947_curated_6
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5593..8190)
DNA (2598bp) protein (866aa)
cphA; cyanophycin synthetase (EC:6.-.-.-); K03802 cyanophycin synthetase [EC:6.-.-.-]
Cyanophycin synthetase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2HIH4_9BURK
Cyanophycin synthetase {ECO:0000313|EMBL:ESJ02415.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
SCNpilot_expt_1000_bf_scaffold_947_curated_7
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8269..10488)
DNA (2220bp) protein (740aa)
cyanophycin synthetase (EC:6.3.2.-); K03802 cyanophycin synthetase [EC:6.-.-.-]
Cyanophycin synthetase {ECO:0000313|EMBL:CAQ68734.1}; EC=6.3.2.- {ECO:0000313|EMBL:CAQ68734.1};; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
Cyanophycin synthetase n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R354_CUPTR
SCNpilot_expt_1000_bf_scaffold_947_curated_8
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10623..13022
DNA (2400bp) protein (800aa)
ABC transporter n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2H9S8_9BURK
ABC transporter {ECO:0000313|EMBL:ESJ02417.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
ABC transporter transmembrane region:ABC transporter related; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_expt_1000_bf_scaffold_947_curated_9
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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13019..13504
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2L345_BORA1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ48843.1}; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella avium (strain 197N).;"
SCNpilot_expt_1000_bf_scaffold_947_curated_10
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13553..14209)
DNA (657bp) protein (219aa)
gph2; phosphoglycolate phosphatase (EC:3.1.3.18); K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
Phosphoglycolate phosphatase Gph n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0EY76_CUPNN
SCNpilot_expt_1000_bf_scaffold_947_curated_11
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14214..14939)
DNA (726bp) protein (242aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64); K00568 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] id=5080087 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
ubiG; 3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64); K00568 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_1000_bf_scaffold_947_curated_12
R_Proteobacteria_53_8, Proteobacteria, Bacteria

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comp(15056..15727)
DNA (672bp) protein (224aa)
Outer membrane protein A n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T1H0_JANMA
ompA; outer membrane protein A; K03286 OmpA-OmpF porin, OOP family
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
SCNpilot_expt_1000_bf_scaffold_947_curated_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15791..17221)
DNA (1431bp) protein (477aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHV6_AZOSU
cytosine deaminase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_947_curated_14
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17383..19971
DNA (2589bp) protein (863aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
DNA gyrase subunit A n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI000302FF19
SCNpilot_expt_1000_bf_scaffold_947_curated_15
unknown

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comp(20110..20721)
DNA (612bp) protein (204aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_947_curated_16
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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20941..22053
DNA (1113bp) protein (371aa)
pheA; prephenate dehydratase (EC:4.2.1.51); K14170 chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
Prephenate dehydratase {ECO:0000313|EMBL:AEK63578.1}; EC=4.2.1.51 {ECO:0000313|EMBL:AEK63578.1};; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
Prephenate dehydratase n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0ADN6_COLFT
SCNpilot_expt_1000_bf_scaffold_947_curated_17
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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22203..23318
DNA (1116bp) protein (372aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
hisC; histidinol-phosphate aminotransferase (EC:2.6.1.9); K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9]
Histidinol-phosphate aminotransferase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2GCZ5_9BURK
SCNpilot_expt_1000_bf_scaffold_947_curated_18
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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23329..24189
DNA (861bp) protein (287aa)
tyrA; prephenate dehydrogenase TyrA (EC:1.3.1.12); K04517 prephenate dehydrogenase [EC:1.3.1.12]
Prephenate dehydrogenase n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X6B2_9BURK
Prephenate dehydrogenase {ECO:0000313|EMBL:KHQ94992.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
Displaying 18 items

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