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SCNpilot_expt_1000_bf_scaffold_1209_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1209_curated_1
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..724)
DNA (723bp) protein (241aa)
PGAP1 family protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JF17_ANAD2
PGAP1 family protein {ECO:0000313|EMBL:BAO30380.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
PGAP1 family protein
SCNpilot_expt_1000_bf_scaffold_1209_curated_2
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(721..1737)
DNA (1017bp) protein (339aa)
Transcriptional regulator, LysR family n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q1W5_ACIAP
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADX44096.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_1000_bf_scaffold_1209_curated_3
unknown

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1859..2071
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1209_curated_4
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

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2218..3438
DNA (1221bp) protein (407aa)
LAO/AO transporter ATPase; K07588 LAO/AO transport system kinase [EC:2.7.-.-]
LAO/AO transport system ATPase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SLS0_THEM7
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
SCNpilot_expt_1000_bf_scaffold_1209_curated_5
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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3435..4124
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P5Y2_AROAE
maturation factor for molybdenum enzyme; K07402 xanthine dehydrogenase accessory factor
Uncharacterized protein {ECO:0000313|EMBL:CAI07279.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_1000_bf_scaffold_1209_curated_6
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4126..5325)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P5Y8_AROAE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI07273.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_1000_bf_scaffold_1209_curated_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5425..8970)
DNA (3546bp) protein (1182aa)
2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A128_9PROT
ifoAB_iorAB; indolepyruvate ferredoxin oxidoreductase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_1209_curated_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9015..10172)
DNA (1158bp) protein (386aa)
Branched-chain amino acid ABC transporter n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P5Z2_AROAE
branched-chain amino acid ABC transporter
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_1209_curated_9
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10169..10939)
DNA (771bp) protein (257aa)
ABC transporter related protein n=1 Tax=uncultured organism RepID=M1Q0T8_9ZZZZ
branched-chain amino acid ABC transporter ATPase; K01996 branched-chain amino acid transport system ATP-binding protein
Tax=GWA2_Rhodocyclales_65_20_curated
SCNpilot_expt_1000_bf_scaffold_1209_curated_10
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10936..12738)
DNA (1803bp) protein (601aa)
Putative branched-chain amino acid transport system protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P3I0_AROAE
branched-chain amino acid transport system protein; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein
Tax=GWA2_Rhodocyclales_65_20_curated
SCNpilot_expt_1000_bf_scaffold_1209_curated_11
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12738..13775)
DNA (1038bp) protein (346aa)
Putative branched-chain amino acid transport system permease protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P3I1_AROAE
branched-chain amino acid transport system permease; K01997 branched-chain amino acid transport system permease protein
Tax=GWA2_Rhodocyclales_65_20_curated
SCNpilot_expt_1000_bf_scaffold_1209_curated_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14012..15013
DNA (1002bp) protein (334aa)
alcohol dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI000361BAEE
alcohol dehydrogenase zinc-binding domain-containing protein
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ACS18139.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_1000_bf_scaffold_1209_curated_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15018..15992)
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNQ2_PUSST
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_1209_curated_14
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15994..18009)
DNA (2016bp) protein (672aa)
Fusion of 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P607_AROAE
fusion of 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase
Tax=CG_Rhodocyc_01
SCNpilot_expt_1000_bf_scaffold_1209_curated_15
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18006..18743)
DNA (738bp) protein (246aa)
ABC transporter n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F1D9_9BURK
branched-chain amino acid transport system protein
Tax=CG_Rhodocyc_01
SCNpilot_expt_1000_bf_scaffold_1209_curated_16
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18740..20503)
DNA (1764bp) protein (588aa)
ABC-type branched-chain amino acid transport systems, ATPase component n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QI88_AZOSU
branched-chain amino acid ABC transporter ATPase; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
SCNpilot_expt_1000_bf_scaffold_1209_curated_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20500..21543)
DNA (1044bp) protein (348aa)
Putative branched-chain amino acid transport system permease protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P3I1_AROAE
branched-chain amino acid transport system permease; K01997 branched-chain amino acid transport system permease protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_1209_curated_18
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21568..22710)
DNA (1143bp) protein (381aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002EF9570
extracellular ligand-binding receptor
Tax=CG_Rhodocyc_01
SCNpilot_expt_1000_bf_scaffold_1209_curated_19
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22743..23762)
DNA (1020bp) protein (340aa)
Putative 3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Variovorax paradoxus B4 RepID=T1X962_VARPD
putative 3-hydroxybutyryl-CoA dehydrogenase
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_1209_curated_20
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23770..24849)
DNA (1080bp) protein (360aa)
Glycerol-3-phosphate dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2TFL6_9BURK
opine dehydrogenase
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_1209_curated_21
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24938..25072)
DNA (135bp) protein (45aa)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
Displaying 21 items

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