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SCNpilot_expt_1000_bf_scaffold_1924_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1924_curated_1
Hyphomonas adhaerens, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(245..928)
DNA (684bp) protein (228aa)
Putative TetR family transcriptional regulator n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G6P1_ALIDK
Transcriptional regulator, TetR family protein {ECO:0000313|EMBL:KCZ86073.1}; TaxID=1280949 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas adhaerens MHS-3.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1924_curated_2
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(967..2361)
DNA (1395bp) protein (465aa)
Uncharacterized protein in cooM 5'region n=3 Tax=Rhodospirillum rubrum RepID=YCOM_RHORU rbh
carboxylyase-like protein
Uncharacterized protein in cooM 5'region; TaxID=1085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum.;"
SCNpilot_expt_1000_bf_scaffold_1924_curated_3
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2545..3372)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000372506B
ClpXP protease specificity-enhancing factor {ECO:0000313|EMBL:EDM85144.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
ClpXP protease specificity-enhancing factor; K03600 stringent starvation protein B
SCNpilot_expt_1000_bf_scaffold_1924_curated_4
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3372..3986)
DNA (615bp) protein (205aa)
Glutathione S-transferase, N-terminal domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7S0Z6_9BURK
Glutathione S-transferase, N-terminal domain protein {ECO:0000313|EMBL:EFV93652.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
glutathione S-transferase; K03599 RNA polymerase-associated protein
SCNpilot_expt_1000_bf_scaffold_1924_curated_5
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4095..4961)
DNA (867bp) protein (289aa)
petC; cytochrome C1 precursor (EC:1.10.2.2); K00413 ubiquinol-cytochrome c reductase cytochrome c1 subunit
Cytochrome C1 family n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7S0Z5_9BURK
Cytochrome C1 family {ECO:0000313|EMBL:EFV93651.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
SCNpilot_expt_1000_bf_scaffold_1924_curated_6
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4974..6359)
DNA (1386bp) protein (462aa)
qcrB; ubiquinol-cytochrome-c reductase, cytochrome b (EC:1.10.2.2); K00412 ubiquinol-cytochrome c reductase cytochrome b subunit
Cytochrome b n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7S0Z4_9BURK
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
SCNpilot_expt_1000_bf_scaffold_1924_curated_7
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6406..7008)
DNA (603bp) protein (201aa)
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit PetA (EC:1.10.2.2); K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2]
Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LNY2_9BURK
SCNpilot_expt_1000_bf_scaffold_1924_curated_8
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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7381..7815
DNA (435bp) protein (145aa)
Large-conductance mechanosensitive channel n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RST4_ACCPU
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
large conductance mechanosensitive channel protein; K03282 large conductance mechanosensitive channel
SCNpilot_expt_1000_bf_scaffold_1924_curated_9
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7859..8605)
DNA (747bp) protein (249aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RDS7_9RHOO
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1924_curated_10
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8646..9830
DNA (1185bp) protein (395aa)
Trypsin-like serine protease (contains C-terminal PDZ domain) (EC:3.4.21.-); K01362 [EC:3.4.21.-]
Membrane associated serine endoprotease n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S8B4_9BURK
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
SCNpilot_expt_1000_bf_scaffold_1924_curated_11
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9993..10808)
DNA (816bp) protein (272aa)
Sec-independent protein translocase protein TatC n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7S0Y8_9BURK
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
tatC; TatABCE protein translocation system subunit; K03118 sec-independent protein translocase protein TatC
SCNpilot_expt_1000_bf_scaffold_1924_curated_12
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10805..11248)
DNA (444bp) protein (148aa)
Sec-independent protein translocase protein TatB n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RN99_ACCPU
twin-arginine translocation protein subunit TatB; K03117 sec-independent protein translocase protein TatB
Sec-independent protein translocase protein TatB {ECO:0000256|HAMAP-Rule:MF_00237, ECO:0000256|SAAS:SAAS00028234}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_1000_bf_scaffold_1924_curated_13
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11367..11576)
DNA (210bp) protein (70aa)
Sec-independent protein translocase protein TatA n=1 Tax=Limnobacter sp. MED105 RepID=A6GMA4_9BURK
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
tatA; Sec-independent protein translocase protein TatA; K03116 sec-independent protein translocase protein TatA
SCNpilot_expt_1000_bf_scaffold_1924_curated_14
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11589..11972)
DNA (384bp) protein (128aa)
Histidine triad (HIT) protein n=2 Tax=Thauera RepID=C4ZLR7_THASP
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_1924_curated_15
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11969..12340)
DNA (372bp) protein (124aa)
Phosphoribosyl-ATP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071052}; Short=PRA-PH {ECO:0000256|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071044};; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
Phosphoribosyl-ATP pyrophosphatase (EC:3.6.1.31)
Phosphoribosyl-ATP pyrophosphatase n=2 Tax=Alcaligenes xylosoxydans xylosoxydans RepID=R4XN06_ALCXX
SCNpilot_expt_1000_bf_scaffold_1924_curated_16
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12337..12762)
DNA (426bp) protein (142aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00103216};; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
hisI; phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19); K01496 phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D52AEC
SCNpilot_expt_1000_bf_scaffold_1924_curated_17
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12749..13528)
DNA (780bp) protein (260aa)
imidazole glycerol phosphate synthase subunit HisF (EC:4.1.3.-); K02500 cyclase [EC:4.1.3.-]
Imidazole glycerol phosphate synthase subunit HisF n=2 Tax=Bacteria RepID=HIS6_DECAR rbh
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
SCNpilot_expt_1000_bf_scaffold_1924_curated_18
Thauera aminoaromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13534..14274)
DNA (741bp) protein (247aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16); K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1234381 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera aminoaromatica S2.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=2 Tax=Thauera RepID=C4ZLR3_THASP
SCNpilot_expt_1000_bf_scaffold_1924_curated_19
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14363..14998)
DNA (636bp) protein (212aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Thauera sp. 63 RepID=N6XJI6_9RHOO
hisH; imidazole glycerol phosphate synthase subunit
SCNpilot_expt_1000_bf_scaffold_1924_curated_20
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15021..15608)
DNA (588bp) protein (196aa)
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
Imidazoleglycerol-phosphate dehydratase n=8 Tax=Burkholderia RepID=HIS7_BURM1 rbh
Displaying 20 items

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