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SCNpilot_expt_1000_bf_scaffold_688_curated

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Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_688_curated_1
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19..1320)
DNA (1302bp) protein (434aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036CFDF8
hypothetical protein
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_1000_bf_scaffold_688_curated_2
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1340..1870)
DNA (531bp) protein (177aa)
Putative TrapT family, dctQ subunit, C4-dicarboxylate transport n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T788_9BRAD
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:KGE02011.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
TRAP dicarboxylate family transporter DctQ subunit
SCNpilot_expt_1000_bf_scaffold_688_curated_3
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1867..2910)
DNA (1044bp) protein (348aa)
TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M5A1E4_9BRAD
trapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein precursor
TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein {ECO:0000313|EMBL:BAM92640.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_expt_1000_bf_scaffold_688_curated_4
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3071..4162)
DNA (1092bp) protein (364aa)
aroG; phospho-2-dehydro-3-deoxyheptonate aldolase AroG (EC:2.5.1.54)
phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Caldimonas manganoxidans RepID=UPI00037EF0E7
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_1000_bf_scaffold_688_curated_5
bacterium YEK0313, Bacteria

Not on your lists

4258..4860
DNA (603bp) protein (201aa)
NAD(P)H quinone oxidoreductase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E9CEA2
p-benzoquinone reductase {ECO:0000313|EMBL:CEJ13655.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
TrpR binding protein WrbA; K03809 Trp repressor binding protein
SCNpilot_expt_1000_bf_scaffold_688_curated_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4878..5306)
DNA (429bp) protein (143aa)
thioredoxin; K03672 thioredoxin 2 [EC:1.8.1.8]
Thioredoxin n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFA5_9PROT
Thioredoxin {ECO:0000313|EMBL:CCU61696.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_1000_bf_scaffold_688_curated_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5399..6328)
DNA (930bp) protein (310aa)
Putative gluconolaconase n=1 Tax=Variovorax paradoxus B4 RepID=T1XDH7_VARPD
putative gluconolaconase
Putative gluconolaconase {ECO:0000313|EMBL:AGU51002.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_1000_bf_scaffold_688_curated_8
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6315..7373)
DNA (1059bp) protein (353aa)
Transcriptional regulator, LacI family n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WRE7_VEREI
regulatory protein LacI; K02529 LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ABM60204.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_1000_bf_scaffold_688_curated_9
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7617..8663
DNA (1047bp) protein (349aa)
Taurine ABC transporter periplasmic binding protein n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X5F8_9BURK
aliphatic sulfonate ABC transporter substrate-binding protein
Taurine ABC transporter periplasmic binding protein {ECO:0000313|EMBL:EON14714.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
SCNpilot_expt_1000_bf_scaffold_688_curated_10
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8665..9462
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00035CC7B6
transport system permease; K02050 NitT/TauT family transport system permease protein
Putative transport system permease protein {ECO:0000313|EMBL:CCN24864.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
SCNpilot_expt_1000_bf_scaffold_688_curated_11
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9459..10232
DNA (774bp) protein (258aa)
ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000368DA01
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EJZ29593.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_688_curated_12
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10381..12084
DNA (1704bp) protein (568aa)
Thiamine pyrophosphate enzyme domain protein TPP-binding n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WRF2_VEREI
thiamine pyrophosphate-binding domain-containing protein
Thiamine pyrophosphate enzyme domain protein TPP-binding {ECO:0000313|EMBL:ABM60209.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_1000_bf_scaffold_688_curated_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12128..12853
DNA (726bp) protein (242aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WRF3_VEREI
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_688_curated_14
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12876..13844
DNA (969bp) protein (323aa)
Uncharacterized protein UPF0065 n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WRF4_VEREI
hypothetical protein
Uncharacterized protein UPF0065 {ECO:0000313|EMBL:ABM60211.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_1000_bf_scaffold_688_curated_15
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13862..14701
DNA (840bp) protein (280aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WRF5_VEREI
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABM60212.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_1000_bf_scaffold_688_curated_16
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14676..15362)
DNA (687bp) protein (229aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RCA1_9RHOO
LuxR family transcriptional regulator
Tax=CG_Rhodocyc_01
SCNpilot_expt_1000_bf_scaffold_688_curated_17
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15554..16552
DNA (999bp) protein (333aa)
dusA; tRNA-dihydrouridine synthase A DusA (EC:1.-.-.-); K05539 tRNA-dihydrouridine synthase A [EC:1.-.-.-]
tRNA-dihydrouridine synthase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSJ1_RUBGI
tRNA-dihydrouridine synthase {ECO:0000313|EMBL:BAO83572.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium B1.;"
SCNpilot_expt_1000_bf_scaffold_688_curated_18
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16407..16850)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RVQ7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFV95390.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_688_curated_19
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16951..18222
DNA (1272bp) protein (424aa)
UPF0761 membrane protein KYC_18100 n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0FAB8_9BURK
UPF0761 membrane protein JL37_01615 {ECO:0000256|HAMAP-Rule:MF_00672}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
ribonuclease BN-like family protein 1; K07058 membrane protein
SCNpilot_expt_1000_bf_scaffold_688_curated_20
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18188..18505)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI0003747261
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJZ58855.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
SCNpilot_expt_1000_bf_scaffold_688_curated_21
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18571..19416)
DNA (846bp) protein (282aa)
Alpha/beta hydrolase fold protein n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1VUZ1_9BURK
alpha/beta hydrolase fold protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_expt_1000_bf_scaffold_688_curated_22
Burkholderia caribensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19443..20747)
DNA (1305bp) protein (435aa)
O-acetylhomoserine/O-acetylserine sulfhydrylase (EC:2.5.1.47); K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
O-acetylhomoserine sulfhydrylase {ECO:0000313|EMBL:ETY77999.1}; EC=2.5.1.48 {ECO:0000313|EMBL:ETY77999.1};; EC=2.5.1.49 {ECO:0000313|EMBL:ETY77999.1};; TaxID=1323664 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia caribensis MBA4.;"
O-acetylhomoserine aminocarboxypropyltransferase n=1 Tax=Burkholderia sp. JPY347 RepID=UPI000376E712
SCNpilot_expt_1000_bf_scaffold_688_curated_23
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20938..22332
DNA (1395bp) protein (465aa)
Response regulator receiver protein n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DVW8_9GAMM
Response regulator receiver protein {ECO:0000313|EMBL:EGV33874.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
response regulator receiver domain-containing protein
SCNpilot_expt_1000_bf_scaffold_688_curated_24
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22348..22737
DNA (390bp) protein (130aa)
Response regulator receiver protein n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DVW7_9GAMM
Response regulator receiver domain protein {ECO:0000313|EMBL:EXJ14498.1}; TaxID=1249627 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
response regulator receiver domain-containing protein; K02658 twitching motility two-component system response regulator PilH
SCNpilot_expt_1000_bf_scaffold_688_curated_25
unknown

Not on your lists

22734..23267
DNA (534bp) protein (178aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_688_curated_26
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23272..24684
DNA (1413bp) protein (471aa)
Methyl-accepting chemotaxis sensory transducer with Cache sensor n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DVW5_9GAMM
Putative methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EXJ14501.1}; TaxID=1249627 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
putative methyl-accepting chemotaxis sensory transducer
SCNpilot_expt_1000_bf_scaffold_688_curated_27
Saccharophagus degradans, Saccharophagus, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24689..28465
DNA (3777bp) protein (1259aa)
Response regulator receiver n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=Q21NE6_SACD2
putative CheA signal transduction histidine kinases
Response regulator receiver {ECO:0000313|EMBL:ABD79783.1}; TaxID=203122 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Saccharophagus.;" source="Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024).;"
SCNpilot_expt_1000_bf_scaffold_688_curated_28
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28523..28987
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GNV5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDM83941.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
CBS domain-containing protein
SCNpilot_expt_1000_bf_scaffold_688_curated_29
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29023..29766
DNA (744bp) protein (248aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
surE; stationary phase survival protein SurE (EC:3.6.1.11); K03787 5'-nucleotidase [EC:3.1.3.5]
stationary phase survival protein SurE n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI000362FFBE
SCNpilot_expt_1000_bf_scaffold_688_curated_30
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29763..30503
DNA (741bp) protein (247aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein L-isoaspartyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein-beta-aspartate methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
pcm1; protein-l-isoaspartate o-methyltransferase (EC:2.1.1.77); K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
Protein-L-isoaspartate O-methyltransferase n=2 Tax=Pandoraea RepID=V5UIB6_9BURK
Displaying items 1-30 of 82 in total

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