ggKbase home page

SCNpilot_expt_1000_bf_scaffold_284_curated_16

Organism: scnpilot_dereplicated_Burkholderiales_4

near complete RP 52 / 55 MC: 2 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 17118..17489

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L20 n=2 Tax=Herbaspirillum RepID=J3D408_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 84.9
  • Coverage: 119.0
  • Bit_score: 203
  • Evalue 1.60e-49
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.9
  • Coverage: 119.0
  • Bit_score: 203
  • Evalue 2.20e-49
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 similarity KEGG
DB: KEGG
  • Identity: 84.2
  • Coverage: 120.0
  • Bit_score: 201
  • Evalue 1.50e-49

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Herbaspirillum sp. CF444 → Herbaspirillum → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 372
ATGCCTCGAGTCAAACGCGGAGTCACGGCGCGCGCGCGCCACAAGAAAGTCATCGCCGCAGCGCGCGGCTATCGCGGCCGGCGCGGCAACGTCTACCGCATCGCCAAGCAGGCGGTGATGCGGGCCGGGCAGTACGCCTATCGCGACCGGCGCACCAAGAAGCGCGTGTTCCGCGCGCTGTGGATCGCCCGCATCAACGCGGCCGCGCGCGAGCACGGCATCTCCTACAGCGTGTTCATCAACGGCCTGAACCGCGCGGCCATCGGCCTCGACCGCAAGGTGCTGGCCGATCTCGCGGTCACCGACAAGCCGGCCTTCGCGGCCATCGTCGCGCAGGTCAAGGCCACGCTCGGCAGCGCCCGCGCCGCCTGA
PROTEIN sequence
Length: 124
MPRVKRGVTARARHKKVIAAARGYRGRRGNVYRIAKQAVMRAGQYAYRDRRTKKRVFRALWIARINAAAREHGISYSVFINGLNRAAIGLDRKVLADLAVTDKPAFAAIVAQVKATLGSARAA*