ggKbase home page

SCNpilot_expt_1000_bf_scaffold_284_curated

Search features with annotation key words

Displaying items 1-30 of 165 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_284_curated_1
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(136..426)
DNA (291bp) protein (97aa)
Resolvase domain-containing protein n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2EKQ2_9BURK
Resolvase domain-containing protein {ECO:0000313|EMBL:EKZ99945.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
resolvase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_284_curated_2
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(990..1514)
DNA (525bp) protein (175aa)
UPI0003CF3425 related cluster n=1 Tax=unknown RepID=UPI0003CF3425
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESY74080.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
SCNpilot_expt_1000_bf_scaffold_284_curated_3
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1706..2659)
DNA (954bp) protein (318aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TL98_MESCW
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:ADV11522.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_284_curated_4
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2837..3262
DNA (426bp) protein (142aa)
Putative thioesterase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P609_AROAE
Thioesterase {ECO:0000313|EMBL:BAO29459.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
thioesterase
SCNpilot_expt_1000_bf_scaffold_284_curated_5
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3509..6007
DNA (2499bp) protein (833aa)
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWF1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFV95326.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_284_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6397..7566
DNA (1170bp) protein (390aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI0003679C1D
Variovorax paradoxus strain MEDvA23 contig_48, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ28459.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative high-affinity branched-chain amino acid ABC transporter, branch-chain amino acid-binding protein
SCNpilot_expt_1000_bf_scaffold_284_curated_7
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7651..8532
DNA (882bp) protein (294aa)
Branched-chain amino acid ABC-type transport system, permease component n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WS34_9BURK
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:EHR72352.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_284_curated_8
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8540..9556
DNA (1017bp) protein (339aa)
Inner-membrane translocator 53 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HQ42_ACHXA
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
Inner-membrane translocator 53 {ECO:0000313|EMBL:ADP18345.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_expt_1000_bf_scaffold_284_curated_9
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9549..10316
DNA (768bp) protein (256aa)
ABC transporter-related protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y508_LEPCP
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein
ABC transporter-related protein {ECO:0000313|EMBL:ACB35904.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_284_curated_10
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10325..11044
DNA (720bp) protein (240aa)
UPI0003D5D901 related cluster n=1 Tax=unknown RepID=UPI0003D5D901
branched amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
LIV-I protein F {ECO:0000313|EMBL:CKI05185.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
SCNpilot_expt_1000_bf_scaffold_284_curated_11
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11100..12311)
DNA (1212bp) protein (404aa)
Iron abc-type transport atpase component {ECO:0000313|EMBL:EIZ05128.1}; EC=3.6.1.3 {ECO:0000313|EMBL:EIZ05128.1};; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
ABC transporter ATP-binding protein (EC:3.6.3.25); K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30]
iron ABC transporter ATP-binding protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00037FC91A
SCNpilot_expt_1000_bf_scaffold_284_curated_12
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12346..14052
DNA (1707bp) protein (569aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47GS7_DECAR
binding-protein dependent transport system inner membrane protein; K02011 iron(III) transport system permease protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_expt_1000_bf_scaffold_284_curated_13
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14269..16188
DNA (1920bp) protein (640aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase n=1 Tax=Herminiimonas arsenicoxydans RepID=SYT_HERAR rbh
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
SCNpilot_expt_1000_bf_scaffold_284_curated_14
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16338..16808
DNA (471bp) protein (157aa)
Translation initiation factor IF-3 n=5 Tax=Burkholderia RepID=D5W9K5_BURSC
translation initiation factor IF-3; K02520 translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
SCNpilot_expt_1000_bf_scaffold_284_curated_15
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


16910..17107
DNA (198bp) protein (66aa)
50S ribosomal protein L35 id=2036117 bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
rpmI; 50S ribosomal protein L35
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
SCNpilot_expt_1000_bf_scaffold_284_curated_16
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17118..17489
DNA (372bp) protein (124aa)
50S ribosomal protein L20 n=2 Tax=Herbaspirillum RepID=J3D408_9BURK
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
SCNpilot_expt_1000_bf_scaffold_284_curated_17
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17602..18687
DNA (1086bp) protein (362aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HJX5_ACHXA
SCNpilot_expt_1000_bf_scaffold_284_curated_18
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18701..21094
DNA (2394bp) protein (798aa)
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
phenylalanyl-tRNA synthetase subunit beta n=1 Tax=Burkholderia kururiensis RepID=UPI00034777F6
SCNpilot_expt_1000_bf_scaffold_284_curated_19
Massilia consociata, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21173..21589
DNA (417bp) protein (139aa)
Integration host factor subunit alpha n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DF76_9BURK
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=760117 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia consociata.;"
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha
SCNpilot_expt_1000_bf_scaffold_284_curated_20
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21627..22037
DNA (411bp) protein (137aa)
Transcriptional regulator, MerR family n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1GZS4_METFK
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ABE50263.1}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
SCNpilot_expt_1000_bf_scaffold_284_curated_21
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22333..22647
DNA (315bp) protein (105aa)
Transcriptional regulator, AbrB family n=8 Tax=Proteobacteria RepID=C6BE34_RALP1
AbrB family transcriptional regulator
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:ACS61994.1}; TaxID=428406 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12D).;"
SCNpilot_expt_1000_bf_scaffold_284_curated_22
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22647..23111
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii (strain 12D) RepID=C6BE33_RALP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS61993.1}; TaxID=428406 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12D).;"
SCNpilot_expt_1000_bf_scaffold_284_curated_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23185..23334)
DNA (150bp) protein (50aa)
Alkylhydroperoxidase like protein, AhpD family (Fragment) n=1 Tax=mine drainage metagenome RepID=T1C4Y6_9ZZZZ
alkylhydroperoxidase-like protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_284_curated_24
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23283..23654)
DNA (372bp) protein (124aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Alkylhydroperoxidase like protein, AhpD family n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TS15_ALIDB
alkylhydroperoxidase
SCNpilot_expt_1000_bf_scaffold_284_curated_25
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23765..24019)
DNA (255bp) protein (85aa)
Chaperonin n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SGB4_METPP
copZ; chaperonin
Chaperonin {ECO:0000313|EMBL:ABM94603.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
SCNpilot_expt_1000_bf_scaffold_284_curated_26
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24127..24609
DNA (483bp) protein (161aa)
Transcriptional regulator, MerR family n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SGB2_METPP
Copper export regulator {ECO:0000313|EMBL:EWS55813.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
copG; MerR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_284_curated_27
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24672..25109)
DNA (438bp) protein (146aa)
camphor resistance protein CrcB n=1 Tax=Lamprocystis purpurea RepID=UPI00037615B1
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
camphor resistance protein CrcB
SCNpilot_expt_1000_bf_scaffold_284_curated_28
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25129..27384)
DNA (2256bp) protein (752aa)
Cyclic diguanylate phosphodiesterase (EAL) domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWE1_9BURK
Cyclic diguanylate phosphodiesterase (EAL) domain protein {ECO:0000313|EMBL:EFV95316.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_284_curated_29
Ralstonia sp. GA3-3, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27499..30198)
DNA (2700bp) protein (900aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=1229514 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. GA3-3.;"
acnA; aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitate hydratase n=1 Tax=Ralstonia sp. GA3-3 RepID=R7XDM4_9RALS
SCNpilot_expt_1000_bf_scaffold_284_curated_30
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30227..30853)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWD9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFV95314.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
hypothetical protein
Displaying items 1-30 of 165 in total

View Taxonomy