ggKbase home page

SCNpilot_expt_1000_bf_scaffold_284_curated_19

Organism: scnpilot_dereplicated_Burkholderiales_4

near complete RP 52 / 55 MC: 2 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 21173..21589

Top 3 Functional Annotations

Value Algorithm Source
Integration host factor subunit alpha n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DF76_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 88.7
  • Coverage: 97.0
  • Bit_score: 173
  • Evalue 1.50e-40
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=760117 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia consociata.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.8
  • Coverage: 98.0
  • Bit_score: 175
  • Evalue 7.30e-41
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha similarity KEGG
DB: KEGG
  • Identity: 93.4
  • Coverage: 91.0
  • Bit_score: 173
  • Evalue 4.80e-41

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Massilia consociata → Massilia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 417
ATGATCCAGTTTGGCCATACGGTCCCGGACCATCTGCATGATCCCTCCGGCGAAGCGCAGATCCCCGCCAGGGCTTCCGAGTCGCCCCTGCCGCCGGCCGACGGCGCGGTGAACGGCAGCGAGCCCCTGACCCTCACCAAGGCGGAGCTCGCCGAGATGCTGTTCGAGCGCGTCGGCCTGAACAAGCGCGAAGCGAAGGACATGGTCGAGACCTTCTTCGACGAGATCCGCGATGCGCTCGAGCGCGGCGAGAGCGTCAAGCTCTCGGGTTTCGGCAACTTCCAGCTGCGCGACAAGCCCCAGCGGCCGGGACGCAACCCGAAGACCGGCGAGGAGATCCCGATCTCCGCCCGGCGCGTGGTCACCTTTCACGCCAGCCAGAAGCTGAAGGCGCAGATCGAGGAGCCGGGCAACTGA
PROTEIN sequence
Length: 139
MIQFGHTVPDHLHDPSGEAQIPARASESPLPPADGAVNGSEPLTLTKAELAEMLFERVGLNKREAKDMVETFFDEIRDALERGESVKLSGFGNFQLRDKPQRPGRNPKTGEEIPISARRVVTFHASQKLKAQIEEPGN*