ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1563_curated_3

Organism: scnpilot_dereplicated_Burkholderiales_4

near complete RP 52 / 55 MC: 2 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(2084..2881)

Top 3 Functional Annotations

Value Algorithm Source
IclR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000371D5A0 similarity UNIREF
DB: UNIREF100
  • Identity: 63.4
  • Coverage: 265.0
  • Bit_score: 329
  • Evalue 4.10e-87
transcriptional regulator, IclR family similarity KEGG
DB: KEGG
  • Identity: 63.0
  • Coverage: 257.0
  • Bit_score: 324
  • Evalue 2.50e-86
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AGU53236.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.0
  • Coverage: 257.0
  • Bit_score: 324
  • Evalue 1.10e-85

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 798
ATGAAGAGCCAGCGGGCGGTCCAGTCGATCGAGGTGGGGGGGCAGCTGCTGCTCGCGCTCGCCCGCCATCCGGCCCCGATGGCGCTCAAGGACCTGGCCGCCGAGGCCGGGCTGTCGGCTTCGCGCGCCCACCCCTACCTGGTGAGCTTCGGCCGGCTCGGGCTGATCGAGCAGGATCCCGCCAGCGGCCGCTATGCGCTCGGTCCGGCGGCGTTCCAGGTCGGCCTGGCCTGCCTCGTGCAGTCCGATCCGATGAAGGCCGCCACGCCGGTGGCCGAGGCGCTCGCTGCACGCACCGGCCATGCGGTAGCCATCGCGGTGTGGGGCAACTTCGGCCCGACCGTGGTGCGCATGATCGACGGCCGGGAACCGCTGCACGTGAGCATGCGCGCTGGCACCGTGATGTCGGTCGCCGGCACGGCCACCGGCAGGGCGTTCGCGGCGGTGCTGCCCGCGAAGACGCTCGAGCAGGCGATGCGCGGCTCGTTCGGCGAGCTGCGCGGCGCCGCGCCGGACGCCGCGGCCAAGGCCGCTGCCGAATGCGAGCAGGGCGCACGCGACTGGCGCGCGCACGGCCTCACCCGGGCGGCAGGCCGTCCCATCCCCGGTGTCAATGCCTTCAGCGCGCCGGTGCTCGGCCACGACGGAGAGGTGGCGCTGACCATCACGGCGCTCGGGCCCCGCGACGTCTTCCCGACGGGATGGGATTCCGCGCCGGCGCAGGCGGTGCGGGCGGCGGCAGCGGAGATCTCGCGCCGGCTCGGCTATCGCGGCGAGCATCGAGCTCCATCACAATGA
PROTEIN sequence
Length: 266
MKSQRAVQSIEVGGQLLLALARHPAPMALKDLAAEAGLSASRAHPYLVSFGRLGLIEQDPASGRYALGPAAFQVGLACLVQSDPMKAATPVAEALAARTGHAVAIAVWGNFGPTVVRMIDGREPLHVSMRAGTVMSVAGTATGRAFAAVLPAKTLEQAMRGSFGELRGAAPDAAAKAAAECEQGARDWRAHGLTRAAGRPIPGVNAFSAPVLGHDGEVALTITALGPRDVFPTGWDSAPAQAVRAAAAEISRRLGYRGEHRAPSQ*