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SCNpilot_expt_1000_bf_scaffold_1563_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1563_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(261..836)
DNA (576bp) protein (192aa)
HNH endonuclease n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V4N9_VARPE
hnh endonuclease
HNH endonuclease {ECO:0000313|EMBL:ADU35880.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_1000_bf_scaffold_1563_curated_2
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1419..1826
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003746100
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
SCNpilot_expt_1000_bf_scaffold_1563_curated_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2084..2881)
DNA (798bp) protein (266aa)
IclR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000371D5A0
transcriptional regulator, IclR family
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AGU53236.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_1000_bf_scaffold_1563_curated_4
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3056..4009
DNA (954bp) protein (318aa)
Beta-lactamase domain protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XZI7_LEPCP
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:ACB36550.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_1563_curated_5
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4026..5744
DNA (1719bp) protein (573aa)
FAD-dependent oxidoreductase; K05712 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127]
Monooxygenase FAD-binding n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XZI8_LEPCP
Monooxygenase FAD-binding {ECO:0000313|EMBL:ACB36551.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_1563_curated_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5732..5944
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2T9G5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL74752.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1563_curated_7
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5974..6522)
DNA (549bp) protein (183aa)
bacterioferritin n=1 Tax=Dyella ginsengisoli RepID=UPI000345717F
Bacterioferritin {ECO:0000313|EMBL:ETX06734.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
ferritin; K03594 bacterioferritin
SCNpilot_expt_1000_bf_scaffold_1563_curated_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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6663..7844
DNA (1182bp) protein (394aa)
Ferredoxin reductase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DTS2_9PROT
Ferredoxin reductase {ECO:0000313|EMBL:CCU62750.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1563_curated_9
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7857..9068)
DNA (1212bp) protein (404aa)
Amidohydrolase n=1 Tax=Thauera phenylacetica B4P RepID=N6YV28_9RHOO
Amidohydrolase {ECO:0000313|EMBL:ENO98136.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
amidohydrolase
SCNpilot_expt_1000_bf_scaffold_1563_curated_10
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9080..9958)
DNA (879bp) protein (293aa)
dihydropteroate synthase DHPS; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
Dihydropteroate synthase DHPS n=1 Tax=Thauera phenylacetica B4P RepID=N6ZUH0_9RHOO
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_expt_1000_bf_scaffold_1563_curated_11
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9955..11859)
DNA (1905bp) protein (635aa)
Ferredoxin (Fragment) n=1 Tax=Thauera phenylacetica B4P RepID=N6Y8Z4_9RHOO
ferredoxin
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_expt_1000_bf_scaffold_1563_curated_12
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11863..12576)
DNA (714bp) protein (238aa)
Putative uncharacterized protein id=4884080 bin=GWC2_Methylomirabilis_70_24 species=Thermoanaerobacter wiegelii genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
vitamin B12 dependent methionine synthase
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_expt_1000_bf_scaffold_1563_curated_13
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12633..13934)
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Thauera phenylacetica B4P RepID=N6YVM7_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO95620.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1563_curated_14
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13931..14260)
DNA (330bp) protein (110aa)
Cobalamin B12-binding domain-containing protein n=1 Tax=Thauera phenylacetica B4P RepID=N6ZTZ7_9RHOO
B12 binding domain/Pterin binding enzyme
Tax=RBG_16_Betaproteobacteria_66_20_curated
Displaying 14 items

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