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SCNpilot_expt_500_p_scaffold_2520_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_2520_curated_1
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..229
DNA (228bp) protein (76aa)
DNA repair protein RadC n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H748_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL12351.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
DNA repair protein RadC; K03630 DNA repair protein RadC
SCNpilot_expt_500_p_scaffold_2520_curated_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(226..1398)
DNA (1173bp) protein (391aa)
putative oxygen-independent coproporphyrinogen III oxidase (HemN-like); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
Putative oxygen-independent coproporphyrinogen III oxidase (HemN-like) n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z6Y1_AZOL4
Coproporphyrinogen III oxidase {ECO:0000313|EMBL:AIL12350.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_2520_curated_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1395..1991)
DNA (597bp) protein (199aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" sour
Ham1-like protein (EC:3.6.1.15); K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19]
Non-canonical purine NTP pyrophosphatase n=2 Tax=Ketogulonicigenium vulgare RepID=E3F137_KETVY
SCNpilot_expt_500_p_scaffold_2520_curated_4

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2287..3453
DNA (1167bp) protein (389aa)
Integrase family protein n=1 Tax=uncultured bacterium RepID=K2EXE5_9BACT
Integrase family protein {ECO:0000313|EMBL:EKE10209.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
integrase family protein
SCNpilot_expt_500_p_scaffold_2520_curated_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3508..5124)
DNA (1617bp) protein (539aa)
Conjugal transfer relaxase TraA n=1 Tax=uncultured bacterium RepID=K2DX40_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL12605.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
conjugal transfer relaxase TraA
SCNpilot_expt_500_p_scaffold_2520_curated_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5073..6698)
DNA (1626bp) protein (542aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13481.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
conjugal transfer relaxase TraA id=4935065 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
traA; Conjugal transfer protein
SCNpilot_expt_500_p_scaffold_2520_curated_7
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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7228..7638
DNA (411bp) protein (137aa)
Transposase n=7 Tax=Bacteria RepID=F7UPE4_SYNYG
Transposase {ECO:0000313|EMBL:CDI01099.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
sll1156; transposase
SCNpilot_expt_500_p_scaffold_2520_curated_8

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comp(8080..8310)
DNA (231bp) protein (77aa)
Regulatory protein, LuxR family n=1 Tax=uncultured bacterium RepID=K2CCZ5_9BACT
Regulatory protein, LuxR family {ECO:0000313|EMBL:EKD72209.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_500_p_scaffold_2520_curated_9
endosymbiont of Acanthamoeba sp. UWC36, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8775..9518
DNA (744bp) protein (248aa)
Bacterial regulatory s, luxR family protein n=1 Tax=Piscirickettsia salmonis LF-89 = ATCC VR-1361 RepID=U4TAZ2_PISSA
Uncharacterized protein {ECO:0000313|EMBL:KIE05687.1}; TaxID=86105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Holosporaceae.;" source="endosymbiont of Acanthamoeba sp. UWC36.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_2520_curated_10
endosymbiont of Acanthamoeba sp. UWC36, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9515..10816
DNA (1302bp) protein (434aa)
Uncharacterized protein {ECO:0000313|EMBL:KIE05686.1}; TaxID=86105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Holosporaceae.;" source="endosymbiont of Acanthamoeba sp. UWC36.;"
major facilitator superfamily transporter id=3645256 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
proline/betaine transporter; K03762 MFS transporter, MHS family, proline/betaine transporter
SCNpilot_expt_500_p_scaffold_2520_curated_11

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10895..11140
DNA (246bp) protein (82aa)
Regulatory protein, LuxR family n=1 Tax=uncultured bacterium RepID=K2CCZ5_9BACT
Regulatory protein, LuxR family {ECO:0000313|EMBL:EKD72209.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 11 items

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