ggKbase home page

SCNpilot_expt_500_p_scaffold_929_curated

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_929_curated_1
unknown

Not on your lists

196..345
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_929_curated_2
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

450..1979
DNA (1530bp) protein (510aa)
Uncharacterized protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3ESH5_AMOA5
Uncharacterized protein {ECO:0000313|EMBL:AIK96572.1}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_929_curated_3
unknown

Not on your lists

2808..2981
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_929_curated_4
unknown

Not on your lists

2953..3252
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_929_curated_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3312..4187)
DNA (876bp) protein (292aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
sucD1; succinyl-CoA synthetase subunit alpha; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2M8X2_9PROT
SCNpilot_expt_500_p_scaffold_929_curated_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4187..5356)
DNA (1170bp) protein (390aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
succinyl-CoA synthetase; K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
malate--CoA ligase subunit beta n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B358EA
SCNpilot_expt_500_p_scaffold_929_curated_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5356..6315)
DNA (960bp) protein (320aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
malate dehydrogenase, NAD-dependent; K00024 malate dehydrogenase [EC:1.1.1.37]
Malate dehydrogenase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RSB0_ACCPU
SCNpilot_expt_500_p_scaffold_929_curated_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6330..6986)
DNA (657bp) protein (219aa)
Phospholipase/carboxylesterase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JE60_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL13337.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
phospholipase/carboxylesterase; K06999 phospholipase/carboxylesterase
SCNpilot_expt_500_p_scaffold_929_curated_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7138..7998
DNA (861bp) protein (287aa)
Putative permease of the drug/metabolite transporter superfamily n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AZ39_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:AIL13338.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
putative permease of the drug/metabolite transporter superfamily
SCNpilot_expt_500_p_scaffold_929_curated_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8103..8468
DNA (366bp) protein (122aa)
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NUO1 {ECO:0000256|HAMAP-Rule:MF_01394}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
NADH:ubiquinone oxidoreductase subunit A n=1 Tax=Kordiimonas gwangyangensis RepID=UPI00037D5233
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
SCNpilot_expt_500_p_scaffold_929_curated_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8459..8989
DNA (531bp) protein (177aa)
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
NADH-quinone oxidoreductase subunit B n=1 Tax=Candidatus Endolissoclinum faulkneri L2 RepID=K7Z454_9PROT
NADH-quinone oxidoreductase subunit B
SCNpilot_expt_500_p_scaffold_929_curated_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8995..9609
DNA (615bp) protein (205aa)
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
nuoC; NADH dehydrogenase subunit C (EC:1.6.99.5); K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit C n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ISX9_RHOCS
SCNpilot_expt_500_p_scaffold_929_curated_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9612..10793
DNA (1182bp) protein (394aa)
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
nuoD; NADH dehydrogenase, D subunit (EC:1.6.99.5); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3]
NADH dehydrogenase subunit D n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225BE9C
SCNpilot_expt_500_p_scaffold_929_curated_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10790..11383
DNA (594bp) protein (198aa)
NADH-quinone oxidoreductase, subunit E n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AKU9_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:AIL13343.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
nuoE; NADH-quinone oxidoreductase, subunit E
SCNpilot_expt_500_p_scaffold_929_curated_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11383..12657
DNA (1275bp) protein (425aa)
NADH dehydrogenase {ECO:0000313|EMBL:AIL13344.1}; EC=1.6.99.5 {ECO:0000313|EMBL:AIL13344.1};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
NADH-ubiquinone oxidoreductase chain F (EC:1.6.5.3)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EV44_9BACT
SCNpilot_expt_500_p_scaffold_929_curated_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12674..14728
DNA (2055bp) protein (685aa)
NADH dehydrogenase {ECO:0000313|EMBL:AIL13345.1}; EC=1.6.99.5 {ECO:0000313|EMBL:AIL13345.1};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
NADH-quinone oxidoreductase, chain G n=1 Tax=alpha proteobacterium BAL199 RepID=A8TL06_9PROT
nuoG; NADH-quinone oxidoreductase, subunit G
SCNpilot_expt_500_p_scaffold_929_curated_17
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14731..15750
DNA (1020bp) protein (340aa)
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
NADH-quinone oxidoreductase subunit H n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AKV2_AZOBR
nuoH; NADH-quinone oxidoreductase, subunit H
SCNpilot_expt_500_p_scaffold_929_curated_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15751..16242
DNA (492bp) protein (164aa)
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
nuoI; NADH dehydrogenase subunit I; K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3]
NADH dehydrogenase subunit I n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B7559E
SCNpilot_expt_500_p_scaffold_929_curated_19
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16336..17901
DNA (1566bp) protein (522aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13348.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Drug resistance transporter, EmrB/QacA subfamily id=4468877 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
EmrB/QacA subfamily drug resistance transporter
SCNpilot_expt_500_p_scaffold_929_curated_20

Not on your lists

18185..19348
DNA (1164bp) protein (388aa)
Integrase family protein n=1 Tax=uncultured bacterium RepID=K2EJZ0_9BACT
Integrase family protein {ECO:0000313|EMBL:EKE10543.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
integrase family protein
SCNpilot_expt_500_p_scaffold_929_curated_21
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19501..22806)
DNA (3306bp) protein (1102aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12605.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
conjugal transfer relaxase TraA id=4935065 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
traA; Conjugal transfer protein
SCNpilot_expt_500_p_scaffold_929_curated_22
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23301..23534
DNA (234bp) protein (78aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12602.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_929_curated_23
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23627..23983
DNA (357bp) protein (119aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12606.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_929_curated_24
GWF2_Gammaproteobacteria_41_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24015..25319)
DNA (1305bp) protein (435aa)
Major facilitator superfamily MFS_1 n=1 Tax=Pelosinus fermentans JBW45 RepID=I9NSR4_9FIRM
rhiD; hypothetical protein
Tax=GWF2_Gammaproteobacteria_41_13_curated
SCNpilot_expt_500_p_scaffold_929_curated_25
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25270..25668)
DNA (399bp) protein (133aa)
Transposase for insertion sequence-like element IS431mec n=1 Tax=Cardinium endosymbiont cEper1 of Encarsia pergandiella RepID=K0P2F5_9BACT
Transposase {ECO:0000313|EMBL:AIK95635.1}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
tnp_5; transposase for insertion sequence-like element IS431mec
SCNpilot_expt_500_p_scaffold_929_curated_26
R_OD1_Falkowbacteria_45_15, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

25806..26468
DNA (663bp) protein (221aa)
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3]
Adenylate kinase n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9JHU1_9FIRM
Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_45_15_curated
SCNpilot_expt_500_p_scaffold_929_curated_27
unknown

Not on your lists

comp(26563..27336)
DNA (774bp) protein (258aa)
NUDIX hydrolase n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225BB45
SCNpilot_expt_500_p_scaffold_929_curated_28
unknown

Not on your lists

27479..28549
DNA (1071bp) protein (357aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_929_curated_29
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28968..30497)
DNA (1530bp) protein (510aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FF16_9BACT
ATPase AAA {ECO:0000313|EMBL:AIK96967.1}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
ntt_1; ADP/ATP translocase; K03301 ATP:ADP antiporter, AAA family
SCNpilot_expt_500_p_scaffold_929_curated_30
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30542..31756)
DNA (1215bp) protein (405aa)
transaldolase; K00616 transaldolase [EC:2.2.1.2]
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI000368A2A7
Tax=RBG_16_Deltaproteobacteria_49_23_curated
Displaying items 1-30 of 35 in total

View Taxonomy