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SCNpilot_expt_500_p_scaffold_1013_curated_3

Organism: scnpilot_dereplicated_Caedibacter_2

near complete RP 52 / 55 BSCG 51 / 51 ASCG 12 / 38
Location: comp(2328..4871)

Top 3 Functional Annotations

Value Algorithm Source
Extracellular ligand-binding receptor n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUK3_PARL1 similarity UNIREF
DB: UNIREF100
  • Identity: 23.6
  • Coverage: 406.0
  • Bit_score: 102
  • Evalue 1.50e-18
livK; branched-chain amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 24.4
  • Coverage: 386.0
  • Bit_score: 131
  • Evalue 9.70e-28
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ABS63586.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 23.6
  • Coverage: 406.0
  • Bit_score: 102
  • Evalue 2.20e-18

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Taxonomy

Parvibaculum lavamentivorans → Parvibaculum → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2544
ATGCGATATCTTTTATACGTTATTTTTTTGTCTACTTCTTTTACTGCAAAAGCATCTATAATAAAATCAGTAGTGCCAGATTCAGATGATTCTCGTGCTCCTTATTCAATCTTATTGGTAGAAGAAGGAGCCCATAGTTTAGGTTTTTATAATTCTAAAGACGGTAAAGAATATGCCCGAGTAGCTTTAACCTCTTTACCTCATGAAATAGCAGTTTCAACCGATCCAAACAAACCTCTAGCTTATATCCCTAATTTTGGTTTAAGAGATTATGATTTAACTATTGGAAATGCAGGCAATAGTATTTCCGTGATTGATTTAGTAAACCAATGCGAAATCTATCGTTTATACACGACATTTAATGGAGAAAATTATTGGGCGCCTCATGGCGTAAAGATTAAAGGGCAAAAATTGTATGTTAATGTTGAATGTATTAATGGTCGTTTACCAGACACTGCTGCTACCCTTGGCCAACAAACCCGAATATTAGTATTTGATCTTAAGCAGGATAAATCTATTGGTCTACAACCTTCTCTAGGTCCTCCTATGGTTTCAAAGGAAATGAATCTTCCGCATGTAACGATTGATAATACTTATGAAATGGCTAATCTCAATATTGAAGCTAAAACTTCTTATTCTGTTTTAGCAGGAACACATAATTTTGTATTTTCTCCTTTGGAAAATAAAGATGATCTTTGGTATTATGCTGGGTTTAATGGAGTTTGTCTTATTGATAGTAAGGATGGTAGAATCAAACTACATCTTCCAACAAATAGAATTGCTCCAGATAATCCAATTAGCTTTAATGGTGCTGTACGAGGTATCTCATTTAGTAACGATGGACAGTCCTTAGTCGTTGCTGCTTATAATCAAGTCACAATAATTGATACTGCTGTATCTGAAGAGTTAAGTGAAGAGTTACAAAAATTAAAACCAGATGCGGAAAAAGTAAAGAACTTAAATAAAAAAATTATTAAATTAAGAATTAATGATTTAGATGTATCACAACTTTTTTATCCAAAATTTACCCCTGACACAAAGTATATTTTGGTTCCTGCACCTCTCGATAATCAAGTTTTAGTTATTGATGTTGAAGGAACAGGGATCATCGAAAAATTGGAAACTAAAAAACGCGTTAAAAAAAGAATTGTAGCAGGTGTTGATCCTTTACAAGTAATTATTTCTCCCGATAATAAGATAGCTTATGTGACCAATGCTGATAGTCCTTGGGTTTCTAGAATTGATTTGGGAAAATTTGAGTTATTACAACCAGATATTATTATTCACCAAACTATGACAGCTCAAGGTGGGCCTAATGGCATGGCTCTTTCAGGATATTTTCCACCTGCTTCTATAGGAACATTGAAACTAGGAACTTGCCTGCCTTTGACAGGTAAGTATGCAAGCGAAGCAAGAGAATGTCGTCTAGGTCTTCAATTTTGGGAACAGATGGTTAATGCAGCAGGGGGCGTTATGTGGCAGGGGAAACGTCATCATATAAAAATTATTTACGAAGATACAGAATCAAGTATAGATGATGAGGTCCTTAAGAAGAAAGCTGAAGCTTTACTAAAAAACAATGAAGCAACTCCGGAAAGTAAAGATAATGGGATTGTGGCAGTATTAGGGACTTTTCCTCCTATAGCAAACAAGTCTATTGCTAAAGCTCTAAAATCGAATGAAATCTCTTTTATTACGTCAACAGGAAGAGAACCAAAATTATTTGAGGAAAATCCTCGTCATGTATTTGGAATTTCTCCAGTTAAGCATGAAGCTGATCTTATCAGCACTTTGAGAGCCCTGTTTCATGGTAATAACTTGACATCAAAACCGCATAAAATTCTTATTTTGGCGTGTAATGATCTAGATTCTATAAGCGAGGCTGAAGGATTAGTTAATTATGCACAAGATAACGAAATTAAAATTTTATCACCTTTAAATGATAAAGATTCGTGGATAAAATACCGGCCTGACACAGCTGAAATAGATAAACTTTTGCAGAAGCTTTCTGAAAAAGCTCATGAACAAGTAAAGTATTGCCCAGATGTTACATTTGTTATAGGCCATAGGCAAGAATCTTTAGATATTTTCAAAGCATGTAGAAAATATAACTTTTCTCCTAGTGCGATAGCGCTAAACACAGGTATTATTAATCCTGCATTTATGACCCAATTAGGTTCTTTAGCCGATAATTTATTAGGAAGCGTATGTTGGTGGGATTCGTGTAGTAATTTTGCTTATGATCGTTTCGTAAGTTCAACAGACTTCCAAAGAAATTTTTATAGTATCTATGGTCAAAATCCATCAGATCTCGTTGCTGGTTTTGCAGCTTCTGGAATTGTATTCGAAGAAGCACTTAGACAAGGGGAAATTCTAAGAACCCAAGGGTGCCATAAAAAGTTAAATGATTTAGTAGCAAATCTTGATTTCACAACTTTCTATGGACCTATAAAGTTTAATACGTCCGGCCAAAATGAAAAAAAGAAAATAACAACAGTTCGGCTTGAACGTATAGGTTCTACTTTAAAAGCGACATCTTTATGA
PROTEIN sequence
Length: 848
MRYLLYVIFLSTSFTAKASIIKSVVPDSDDSRAPYSILLVEEGAHSLGFYNSKDGKEYARVALTSLPHEIAVSTDPNKPLAYIPNFGLRDYDLTIGNAGNSISVIDLVNQCEIYRLYTTFNGENYWAPHGVKIKGQKLYVNVECINGRLPDTAATLGQQTRILVFDLKQDKSIGLQPSLGPPMVSKEMNLPHVTIDNTYEMANLNIEAKTSYSVLAGTHNFVFSPLENKDDLWYYAGFNGVCLIDSKDGRIKLHLPTNRIAPDNPISFNGAVRGISFSNDGQSLVVAAYNQVTIIDTAVSEELSEELQKLKPDAEKVKNLNKKIIKLRINDLDVSQLFYPKFTPDTKYILVPAPLDNQVLVIDVEGTGIIEKLETKKRVKKRIVAGVDPLQVIISPDNKIAYVTNADSPWVSRIDLGKFELLQPDIIIHQTMTAQGGPNGMALSGYFPPASIGTLKLGTCLPLTGKYASEARECRLGLQFWEQMVNAAGGVMWQGKRHHIKIIYEDTESSIDDEVLKKKAEALLKNNEATPESKDNGIVAVLGTFPPIANKSIAKALKSNEISFITSTGREPKLFEENPRHVFGISPVKHEADLISTLRALFHGNNLTSKPHKILILACNDLDSISEAEGLVNYAQDNEIKILSPLNDKDSWIKYRPDTAEIDKLLQKLSEKAHEQVKYCPDVTFVIGHRQESLDIFKACRKYNFSPSAIALNTGIINPAFMTQLGSLADNLLGSVCWWDSCSNFAYDRFVSSTDFQRNFYSIYGQNPSDLVAGFAASGIVFEEALRQGEILRTQGCHKKLNDLVANLDFTTFYGPIKFNTSGQNEKKKITTVRLERIGSTLKATSL*