ggKbase home page

SCNpilot_expt_500_p_scaffold_1013_curated

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1013_curated_1
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..505
DNA (504bp) protein (168aa)
Tetratricopeptide repeat protein n=1 Tax=uncultured bacterium RepID=K2EY05_9BACT
NB-ARC domain-containing protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_expt_500_p_scaffold_1013_curated_2
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(509..2281)
DNA (1773bp) protein (591aa)
flavin containing amine oxidoreductase; K00274 monoamine oxidase [EC:1.4.3.4]
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI000344F6D1
Uncharacterized protein {ECO:0000313|EMBL:KGM33248.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_expt_500_p_scaffold_1013_curated_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2328..4871)
DNA (2544bp) protein (848aa)
Extracellular ligand-binding receptor n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUK3_PARL1
livK; branched-chain amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ABS63586.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_500_p_scaffold_1013_curated_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5222..10546)
DNA (5325bp) protein (1775aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037FE851
Uncharacterized protein {ECO:0000313|EMBL:AIL13878.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
conjugal transfer relaxase TraA
SCNpilot_expt_500_p_scaffold_1013_curated_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10737..11021
DNA (285bp) protein (95aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13755.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_1013_curated_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11038..11415
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225BB3D
Uncharacterized protein {ECO:0000313|EMBL:AIL13880.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_1013_curated_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11418..11651
DNA (234bp) protein (78aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13940.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_1013_curated_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11652..13820
DNA (2169bp) protein (723aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
RecD/TraA-family helicase (EC:3.1.11.5)
RecD/TraA-family helicase n=1 Tax=Octadecabacter antarcticus 307 RepID=M9R2S3_9RHOB
SCNpilot_expt_500_p_scaffold_1013_curated_9
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

13841..14461
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3ER19_AMOA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACE05671.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_expt_500_p_scaffold_1013_curated_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14599..15069
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225A9F7
Uncharacterized protein {ECO:0000313|EMBL:AIL13938.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ProP expression regulator; K03607 ProP effector
SCNpilot_expt_500_p_scaffold_1013_curated_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15166..15447
DNA (282bp) protein (94aa)
Prevent-host-death protein {ECO:0000313|EMBL:AIL13845.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Prevent-host-death family protein id=4118477 bin=GWF2_Bacteroidetes_39_10 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_39_10 organism_group=Bacteroidetes
prevent-host-death family protein
SCNpilot_expt_500_p_scaffold_1013_curated_12
uncultured Desulfobacterium sp., Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15444..15752
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YLL6_9DELT
Putative uncharacterized protein {ECO:0000313|EMBL:CBX30999.1}; TaxID=201089 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium; environmental samples.;" source="uncultured Desulfobacterium sp.;"
plasmid stabilization system protein
SCNpilot_expt_500_p_scaffold_1013_curated_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16539..17123
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Rivularia sp. PCC 7116 RepID=K9RG07_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:AIL13512.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1013_curated_14
unknown

Not on your lists

17365..19467
DNA (2103bp) protein (701aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1013_curated_15
Legionella pneumophila, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19852..20478
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Legionella pneumophila (strain Lens) RepID=Q5WXL6_LEGPL
hypothetical protein; K07497 putative transposase
Uncharacterized protein {ECO:0000313|EMBL:CAH15316.1}; TaxID=297245 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella pneumophila (strain Lens).;"
SCNpilot_expt_500_p_scaffold_1013_curated_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21192..21893)
DNA (702bp) protein (234aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13216.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
id=2998018 bin=GWA1_Alphaproteobacteria_45_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
SCNpilot_expt_500_p_scaffold_1013_curated_17
unknown

Not on your lists

comp(22297..22494)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1013_curated_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22897..23190)
DNA (294bp) protein (98aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13823.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_1013_curated_19
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23318..23536
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B759
Uncharacterized protein {ECO:0000313|EMBL:AIL13758.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_1013_curated_20
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23802..24293
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225BB2E
Uncharacterized protein {ECO:0000313|EMBL:AIL13938.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
proQ; solute/DNA competence effector; K03607 ProP effector
SCNpilot_expt_500_p_scaffold_1013_curated_21
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24381..25280
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EWS9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL13759.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
transposase
SCNpilot_expt_500_p_scaffold_1013_curated_22
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25394..25915
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225BEAD
Uncharacterized protein {ECO:0000313|EMBL:AIL13640.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SOS response UmuD protein
SCNpilot_expt_500_p_scaffold_1013_curated_23
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25915..27165
DNA (1251bp) protein (417aa)
DNA-directed DNA polymerase (EC:2.7.7.7); K03502 DNA polymerase V
DNA-directed DNA polymerase n=1 Tax=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) RepID=C6BX75_DESAD
Uncharacterized protein {ECO:0000313|EMBL:AIL13641.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_1013_curated_24
R_Gammaproteobacteria_36_30, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27955..28932
DNA (978bp) protein (326aa)
birA; biotin operon repressor (EC:6.3.4.15); K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
Biotin operon repressor n=1 Tax=Coxiella burnetii (strain CbuG_Q212) RepID=B6J079_COXB2
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_36_30_curated
SCNpilot_expt_500_p_scaffold_1013_curated_25
Dictyostelium fasciculatum, Dictyostelium, Dictyosteliida, Eukaryota

Not on your lists

comp(28929..30320)
DNA (1392bp) protein (464aa)
Propionyl-CoA carboxylase n=1 Tax=Dictyostelium fasciculatum (strain SH3) RepID=F4PGF7_DICFS
pccA; propionyl-CoA carboxylase
Propionyl-CoA carboxylase {ECO:0000313|EMBL:EGG24791.1}; TaxID=1054147 species="Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium.;" source="Dictyostelium fasciculatum (strain SH3) (Slime mold).;"
SCNpilot_expt_500_p_scaffold_1013_curated_26
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30893..31261)
DNA (369bp) protein (123aa)
Resolvase domain protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L019_HALNC
Uncharacterized protein {ECO:0000313|EMBL:AIL13772.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
resolvase
SCNpilot_expt_500_p_scaffold_1013_curated_27
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31366..31923)
DNA (558bp) protein (186aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13862.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_1013_curated_28
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32144..32851)
DNA (708bp) protein (236aa)
Uncharacterized conserved protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SU28_JANMA
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
SCNpilot_expt_500_p_scaffold_1013_curated_29
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32921..33856)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225AEE1
Uncharacterized protein {ECO:0000313|EMBL:AIL12652.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_1013_curated_30
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34133..34957
DNA (825bp) protein (275aa)
Uncharacterized conserved protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W4G7_MAGSA
Uncharacterized protein {ECO:0000313|EMBL:AIL13048.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
Displaying items 1-30 of 40 in total

View Taxonomy