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SCNpilot_expt_500_p_scaffold_1741_curated_8

Organism: scnpilot_dereplicated_Caedibacter_2

near complete RP 52 / 55 BSCG 51 / 51 ASCG 12 / 38
Location: 7678..11865

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.0
  • Coverage: 999.99
  • Bit_score: 2612
  • Evalue 0.0
rpoC; RNA polymerase, beta prime subunit; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 75.3
  • Coverage: 999.99
  • Bit_score: 2140
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z362_AZOL4 similarity UNIREF
DB: UNIREF100
  • Identity: 75.3
  • Coverage: 999.99
  • Bit_score: 2140
  • Evalue 0.0

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Taxonomy

Candidatus Caedibacter acanthamoebae → Caedibacter → Rickettsiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 4188
ATGAGTAATTTAATGAATATGTTTGGCCAGGTCAAAAATGCTGCAAATTTTGACCATCTTAAGATCTCGATTGCAAGTCCTGAAAAGATTCGCTCTTGGTCTTATGGAGAAGTAAAAAAGCCAGAGACAATTAACTATCGTACATTTAAGCCTGAAAGAGATGGTCTTTTTTGTGCGCGCATATTTGGTCCTGTGAAGGATTACGAATGCTTGTGTGGTAAATATAAACGCATGAAATATCGTGGTATTATCTGTGAAAAGTGTGGTGTTGAAGTCACCCTTTCCAAAGTGCGCCGTGATCGTATGGGACATATTGAACTTGCAACACCCGTAGCCCACATTTGGTTTACAAAATCACTTCCAAGTCGTGTTGCCCAGTTGCTTGATCTTACAATGAAAGATCTTGAGAAAGTTCTTTATTTTGAAAGCTATATTGTCGTTGAAGCAGGGTTGACGCCTTTAAAACAGCATCAACTTTTGACTGAAGAAGAGTATATTGATGCTCAGGATGAATATGGGGAAGATGCTTTTACTGCAGGAATTGGTGCCGAAGCTTTAAAAGCGATGTTGTCACAAATTCATCTTGAAGAAGAACAGAAAAGCCTACGTGAAGAGCTGTACGAAACAACGTCAGAAATGCGTCGTAAAAAGCTTGTTAAACGTTTGAAGATTGTTGAAGCTTTCTTAGCGTCAGAGACACGTCCTGAATGGATGGTATTGGATGTTCTTCCGGTTATCCCACCTGAACTTCGCCCTCTCGTTCCTCTTGATGGTGGCCGCTTTGCAACTTCAGATCTTAATGATTTATACCGCCGTGTTATCAATAGAAATAATCGTTTGCGTCGTTTAATGGAACTTCGTGCACCGGATATTATTATTCGAAACGAAAAGAGAATGTTGCAAGAATCAGTTGATGCGCTCTTTGATAATAGCCGTCGTGCACGTCCTATCGCTGGTGCCAATAAGCGTCCTCTAAAATCGCTTGCAGATATGCTCAAAGGAAAACAAGGACGTTTCCGTCAGAACTTGCTTGGTAAACGTGTTGATTATTCAGGACGTTCTGTCATTGTGGTGGGACCTGAGCTTAAGCTTCATCAATGTGGTCTTCCTAAGAGAATGGCATTAGAACTTTTCAAGCCGTTTGTTTATTCTCGACTTGAGCGTTATGGCCTTGCAAGCACAATTAAAGCAGCAAAACGTATGGTTGAGCGTGAACGTCCCGAAGTTTGGGATATTCTTGAAGAAGTCATCCGCGAACATCCAGTGCTTTTGAACCGTGCGCCGACACTTCACCGTCTAGGTATTCAGGCATTTGAACCGACTTTGATTGAAGGTAAAGCAATTCAGCTGCATCCTCTCGTTTGTACAGCTTTTAACGCCGACTTTGACGGTGACCAAATGGCTGTTCACGTTCCTCTGTCAATTGAAGCTCAGCTCGAATCTCGTGTTCTGATGATGTCCACGAATAACATTCTAAGCCCTGCGAGCGGTCGCCCAATTATCGTTCCAACAAAAGATATTGTTCTAGGTCTTTACTACCTTACAATGATGCGTGAGGGCGAAAAAGGCGAAGGCATGACGTTTGTTTCGATTGGCGAACTTGAGCAAGCTTTGAATGCGGGTCTTATCTCTTTACATACTAAGATTAAAGCACGTTACCATGGTGTTGATGCGGAAGGTAAAAAGATATCTTCAATCGTTGAAACGACGCCTGGACGCTTTATTTTATCAGATATTTATCCACGCCATCCTAATTTAGGTTTTGAGGTTATTAATTGCCTGTTAACCAGCAAGGACATTACCAAACTTATCGATGTCGTTTATCGTCACTGTGGTCAGAAAGAAACTGTTATTTTCACAGATCGTCTGATGGCATTGGGCTTTAAATATGCAACTTACTCAGGTGTTTCATTCGGTAAAGATGACCTTTTGATTCCAGCAGAAAAAGAGCAACTTGTTAATGAGACACATGACATGGTTGCCAAGTATGAGCAGCAATATCTTGACGGTCTTATTACACAAGGTGAGAAGTATAACAAAGTCGTTGACGCTTGGGCGCAATGCTCTGAAAAAGTAGCGCAAGCGATGATGAAAGGGCTTTCAAACGTTGAAGCTGGGAAACCTGTAAACTCAGTTTATATGATGGCTCACTCCGGCGCCCGTGGTTCTGCAGCGCAGATGAAACAGTTGGCCGGAATGCGCGGTCTAATGACGAAACCTTCGGGTGAGATTATTGAGACGCCAATTATTTCTAACTTCAAAGAAGGATTGACCGTTCTTGAGTACTTTAACTCGACACACGGTGCACGTAAGGGACTTTCTGATACCGCGTTGAAGACAGCTAACTCAGGATACCTCACACGTCGTCTTGTCGACGTTGCTCAAGATGGTGTTATTACAATTGAAGATTGCGGAACTGAAAATGGTATTTCCGTAAAAGCAGTTGTTGAAGGCAGCGAAGTCTTAACGCCTCTATCTGAGCGTGTTCTAGGGCGTACTATCCTTGAGGATCTAATTGACCCTACAACGGATGAAGTTGTTGCGCACAAAGGCGAGACTCTTGATGAAGTCCATATTGAACGTCTTGAGCAAACAAGTATTGACGAAATTCGTATTCGTTCTGCGTTAACCTGTGAAGCAGAGACAGGCATTTGCGGTAATTGTTATGGTCGTGACTTGGCACGTGGAACACGGGTTAATATGGGTGAAGCGGTTGGTGTGATCGCCGCTCAATCGATTGGAGAGCCTGGAACACAGCTTACAATGCGGACTTTCCACATTGGTGGAACAGCGCAAGGTGCGGGTGAGAAGTCTAGTATTGAATCTTCAATTGATGCACTCGTTGAAATTGTCAACCGTAACGTTGTTATGAACAGCGAAGGTATTCCAATTGTAATGAACCGTTACTGTGAAGTTGTCTTGAAAGACGCAAAAGATCGTGAACGTGCTCGTTACAAGCTTCCTTATGGTGCGCGTCTTCTCACTGATGAGGGTACAAAAGTGAAGAAAGGCCAGAAATTAGCAGAATGGGATCCATTCACCTTGCCAATTATCACTGAAACCGATGGTGTTGTTCATTACGTTGATCTCGTAGAAGGTGTTTCAATGCGCGAAGTCATGGATGAAACGACGGGTATTGCGAGCCGTGTGATCATTGACTGGCGTCAGCAACCACGTGGAGCTAACTTAAAGCCACGTATTGCGCTAAGAGATAAGAAGGGTGAAGCTTTAACATTACTAAGTGGTGTCGAAGCAAGATACTTCTTACCTGTTGATGCTATTCTGAATGTCGACAACCATGCTGAAGTAAAAGCCGGTGATATTATCGCGCGTATTCCTAGAGAAAGCTCAAAGACACGTGATATTACAGGAGGTCTTCCTCGTGTGGCTGAACTTTTTGAAGCACGCATGCCTAAAGATCATGCGATTATCAGTGAAATTGATGGTCGTGTAGAATTCGGCAAAGATTACAAAACCAAGCGTCGTATTCGTGTTGTCCCAACAGAGGGTAATGGAGAGCCTTTAGAATATATGATTCCAAAAGGTCGTCACGTTACAGTGTTTGAAGGTGACTACGTTAAACGTGGTGAGCTTCTTGTCGATGGAAATCCTGTGCCTCATGAGATCTTACGTATTCTTGGTGTGGAAGCCTTGGCAAGTTACTTGATTAATGAAATTCAAGAAGTGTATCGCTTACAAGGTGTTAAAATTAACGATAAACACATTGAAGTGATCGTGCGTCAAATGCTTCAGAAGATTGAAATTGAGGATCCAGGTGATTCTACTTATCTTGTGGGCGAACATGTTGATCGCCGTGAATTTAATGACATCTGCGATAAACTGCTTAAAGACAACTTAAGACCTGCAGTTGGACATCCTGTATTGCAAGGTATTACCAAGGCTTCGCTTCAAACAGAGTCGTTTATTTCGGCAGCATCTTTCCAAGAAACCACACGTGTTCTTACAGAAGCCGCTGTGGCTGGAAAGATTGACAATCTCATCGGCTTGAAGGAAAACGTCATTGTGGGACGTCTGATTCCGGCTGGAACAGGGAGTGTGATTAATAACCTAAAACGTGTTGCAACCAAGCTTGATCTTGAACGCGTAGCGCAAGAAACTCCCTCAAACGAAATAGCTTTACCGCCTGTTTCTTCTGAGGCGAAGGAAATGCCAGAACAAAACGCTTAA
PROTEIN sequence
Length: 1396
MSNLMNMFGQVKNAANFDHLKISIASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRDRMGHIELATPVAHIWFTKSLPSRVAQLLDLTMKDLEKVLYFESYIVVEAGLTPLKQHQLLTEEEYIDAQDEYGEDAFTAGIGAEALKAMLSQIHLEEEQKSLREELYETTSEMRRKKLVKRLKIVEAFLASETRPEWMVLDVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLMELRAPDIIIRNEKRMLQESVDALFDNSRRARPIAGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKRMALELFKPFVYSRLERYGLASTIKAAKRMVERERPEVWDILEEVIREHPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLESRVLMMSTNNILSPASGRPIIVPTKDIVLGLYYLTMMREGEKGEGMTFVSIGELEQALNAGLISLHTKIKARYHGVDAEGKKISSIVETTPGRFILSDIYPRHPNLGFEVINCLLTSKDITKLIDVVYRHCGQKETVIFTDRLMALGFKYATYSGVSFGKDDLLIPAEKEQLVNETHDMVAKYEQQYLDGLITQGEKYNKVVDAWAQCSEKVAQAMMKGLSNVEAGKPVNSVYMMAHSGARGSAAQMKQLAGMRGLMTKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLSDTALKTANSGYLTRRLVDVAQDGVITIEDCGTENGISVKAVVEGSEVLTPLSERVLGRTILEDLIDPTTDEVVAHKGETLDEVHIERLEQTSIDEIRIRSALTCEAETGICGNCYGRDLARGTRVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQGAGEKSSIESSIDALVEIVNRNVVMNSEGIPIVMNRYCEVVLKDAKDRERARYKLPYGARLLTDEGTKVKKGQKLAEWDPFTLPIITETDGVVHYVDLVEGVSMREVMDETTGIASRVIIDWRQQPRGANLKPRIALRDKKGEALTLLSGVEARYFLPVDAILNVDNHAEVKAGDIIARIPRESSKTRDITGGLPRVAELFEARMPKDHAIISEIDGRVEFGKDYKTKRRIRVVPTEGNGEPLEYMIPKGRHVTVFEGDYVKRGELLVDGNPVPHEILRILGVEALASYLINEIQEVYRLQGVKINDKHIEVIVRQMLQKIEIEDPGDSTYLVGEHVDRREFNDICDKLLKDNLRPAVGHPVLQGITKASLQTESFISAASFQETTRVLTEAAVAGKIDNLIGLKENVIVGRLIPAGTGSVINNLKRVATKLDLERVAQETPSNEIALPPVSSEAKEMPEQNA*